RNA id: XM_021561450.2


Basic Information

Item Value
RNA id XM_021561450.2
length 1790
RNA type mRNA
GC content 0.47
exon number 9
gene id LOC110488956
representative False

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 19738207 ~ 19753902 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCCGAGTTGCACAAAACAGGAAATTACATGAGTGCAACAACACAGAGGTCCGACGTTGCAAATAAGGCAGCACTTGTTCAGCCTGCAACCGAAAGACCAGCTTATGACAGAATGTCAGGCATTGAAGAAACTTCACATGTATCCTCAGAATTgcaggatgagaggaggagcGAGGAAGGGGTCGAAGAGGAGCCCGAAATTGACTATGAAAACCCGTTCCGTTATATGTTTTAcagAGACAGAAAAGAATGGGCTGATTTAGAACCTGTTCCACAAGATGATGGTCCCAATCCTGTTGTGAAGATTGCCTACTCTGACAAGTTCACAGACGTGTATGACTATTTCCGAGCGTTATTGAAGAATGATGAAAAAAGCGACAGGGCATTCACGCTGACGGCTGAAGCTATTGAACTGAATGCTGCAAATTACACTGTATGgCACTACCGGCGAGTGTTACTGCAGGCCCTGGAGAAGGAcctgagagaggagatgaggtacATTACGGCCATCATTGAGGACCAGCCCAAAAACTACCAAGTCTGGCACCATAGACGTATGGTGGTGGAGTGGCTGAACGACCCCTCGGAAGAACTGGAGTTCATTGCAGAGATCCTAAGTCAGGATGCTAAGAACTACCACGCCTGGCAGCACAGACAGTGGGTCCTCAAGGAGTACAAGCTGTGGGACAGTGAGCTGGAGTATGTGGAGCAGTTGTTGGAGGAGGATGTGAGGAACAACTCTGCATGGAACCAGAGGCACTACGTCATCTCCCACACAACAGGCTACTCAGACCCATCCATACTCAACAGAGAAGTACAGTACAGTCTCAAACAGATCAAGAAGGCTCCCCACAATGAAAGTGTGTGGAACTATTTGAAAGGGATTCTGCAGGACCGGGGCCTGTCGTCCCACCCGGGTCTCCTGGAGCAGATCCTGGAGCTCAAGGAGACCCACTGCTCGCCCTACCTGCTGGGCTTCCTGGTGGACATCTACGAGGACTCCCTGGAGAACACCTCAGGAGACCAGGTGGAGGTCCTTAGCAAGGCCCTGGAGCTCTGTGAGCTCCTGGCCCAGGAGAAGGACACCATCCGGAGGGAGTACTGGAGCTACGTAGGCCGCTCCCTGCAGATGAAATACTGCTCTGATGACCCCTCTACCACCAGCAGCGCCCCAGAAACTGACCGAGGATCAGCCTCAGTCTCCGTTCACCAGGAGACCACCTGCAATAGCTAAAAGAAGACATAGAACCCAATGGGAGTCGAGGGAGCAACCGCTTTTATTCAGTCTGCGTTTGTTTGGCAATAGTGCAGCATTACCAcattggttaaataaaatacaaagagAAATAACAACAGAAACACTAAGCTACTGTAAAAGAGAACTCACTGCAGATAAGTATTATGACTTAGGATAGAAGATATGAATGCCTGCTGTCATTGTCATGTATTAAGGTTTATAGCCATAGGTGAGCTAGTTTGGATGTTGAAGACTTGAGTGTGTGCTAACCAAGAGTCTTATTGCTGTGAATGTTGGCTTTCAGATCATACTGTATCTAGAGTAATTATGCTTTTTTTGGGATTTCTTCTGCTGCGCAGTACACAGGGATATTTGTATATGACACTGTAGCTAAGAAGATGTTGCTTCTTGCCTAAAAGCCCTTAAAACATCTCTGTGTAGATAGATACATATTGCTGTCGTTGCCAAAACACTGTATAACCAAACTCGGCATTGCTGTAGGCTACAGAGTCTTTTGTACACTAACTAATTATATGGTTATTCTAAACTGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1398188 lncRNA downstream 40824 19697019 ~ 19697383 (-) True G1224969
TU1398187 lncRNA downstream 41757 19696082 ~ 19696450 (-) True G1224968
TU1398180 lncRNA downstream 52104 19685816 ~ 19686103 (-) True G1224961
TU1398177 lncRNA downstream 60256 19677749 ~ 19677951 (-) True G1224958
TU1398168 lncRNA downstream 67158 19670584 ~ 19671049 (-) True G1224950
TU1398234 lncRNA upstream 23960 19777002 ~ 19777276 (-) True G1225011
TU1398273 lncRNA upstream 63261 19816303 ~ 19816593 (-) True G1225034
TU1398274 lncRNA upstream 63632 19816674 ~ 19817082 (-) True G1225035
TU1398276 lncRNA upstream 69179 19822221 ~ 19822475 (-) True G1225037
TU1398277 lncRNA upstream 70568 19823610 ~ 19823830 (-) True G1225038
XM_036943117.1 mRNA downstream 15273 19720960 ~ 19722934 (-) True LOC118938704
XM_036943114.1 mRNA downstream 309162 19283198 ~ 19429045 (-) True limch1b
XM_036943110.1 mRNA downstream 309164 19283198 ~ 19429043 (-) False limch1b
XM_036943111.1 mRNA downstream 309164 19283198 ~ 19429043 (-) False limch1b
XM_036943113.1 mRNA downstream 309165 19283198 ~ 19429042 (-) False limch1b
XM_021561454.2 mRNA upstream 2963 19756005 ~ 19771671 (-) True LOC110488957
XM_021561455.2 mRNA upstream 36744 19789786 ~ 19845909 (-) True LOC110488958
XM_036943125.1 mRNA upstream 195326 19948368 ~ 19960700 (-) True LOC110488960
XM_036943131.1 mRNA upstream 362483 20115525 ~ 20130254 (-) False LOC118938705
XM_036943127.1 mRNA upstream 382137 20135179 ~ 20163475 (-) False LOC110488962
TU1394921 other downstream 2338972 17398341 ~ 17399235 (-) True asb5a
TU1391998 other downstream 4420047 15317793 ~ 15318160 (-) True G1219208
TU1391564 other downstream 4743828 14993820 ~ 14994379 (-) True G1218808
TU1391105 other downstream 5180826 14556833 ~ 14557381 (-) True LOC110488886
TU1390045 other downstream 6023330 13705263 ~ 13714877 (-) True LOC110488853
TU1398282 other upstream 82836 19835878 ~ 19836319 (-) True G1225043
TU1398774 other upstream 380669 20133711 ~ 20134053 (-) True G1225499
TU1398810 other upstream 568736 20321778 ~ 20325219 (-) True G1225505
TU1398964 other upstream 712688 20465730 ~ 20470523 (-) True G1225647
TU1399197 other upstream 969995 20723037 ~ 20723236 (-) True G1225875

Expression Profile