RNA id: XM_036943125.1


Basic Information

Item Value
RNA id XM_036943125.1
length 2047
RNA type mRNA
GC content 0.49
exon number 8
gene id LOC110488960
representative True

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 19948368 ~ 19960700 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTGTGTGGTCATGTGACTTCCTCTTAGTCTCTGGCTCCACTCTGTCAAACAGGAAGTCACTCTTTTTGTCTCTACTTTTTTGTCCTCTAGCAGTGACAACAGAGTGATAGGAGCCGCTGAAGTCTGCATTGGTACCCGTCTCTCCACTTTTGACCACAAAGAATTGCAGGAGGAACCATAGAGGAACAATGTTACGGCGAAAACCTTCCAACGCCTCAGAGAAGGAGCAGGTGCTGGAGAAGGTGCAGAAGGAGAAGGTGCAGAAGAAGAAGCTCACCCTGCAGAGGTCCAGCAGCTTCAAGGACTTCATGAAGCCCAAGTCCCCTGTAGTGCTGGACAAGGAGTTCAATTTGGACTACACAGTGCCGGAGGATGTGTCTGAGGAGGAGGCAGTGAAGAGTGGCAGTAAGCAGGGGAAGAAGTCGTGGCGTAACGTCATCTCACGCACCATGACCCGTAAAACCTCCAAGAGGGTACAGAAGGCTCTGGCAGAGGGGGGGGAAAGTGGTGAGGAGGGCTCCCCGTCCCCCACCACAGACTGGATGCCAGACCTGACAGCAGGCAATAGGACCTCCGTGTGCTCCACAGGCTCAGAGGACACCATCTACAGCCCCCTCTCTCGCCAGCTCTCTGGGtGTGGGGACCGCCAGAGCCTAGACAGTGgctacagccagagagacagcATGAGGCTGGAGGAGTCCAGTCCTCCCTACACAGGCCCCTTCTGTGGTCGCGCCCGCGTCCACACAGACTTCATCCCCAGCCCCTACGACATTGAGTCCCTCAAGCTCCAAAAAGGTGACATCATCCAGATAATTGAGAAAGACCCTGTGGGCACATGGACGGGGAAGCTCAACAACAAGGTGGGCACCTTTAAGTTCATCTACGTCAACATCCTACCGGACGAGACCACACCGCCCATGAGGAAGAGGTGCTCCGGCAAGAACCGCCGCTCCATGGCCAAAGACAAGCCCCAGACCCTGGAGGAAGTTCTGGAGAGGATCGGTCTCACCGAGCTGGGCTCTTTGCTGTCTATGCATGGCTTCCAGAGCCTGGAGGACTTTAGCGGACTGAAGGAGTCCCACCTCAATGAGCTCAACATCACAGATGCTGAACAACGTACAAAGATCCTGACTGCTACTGAGCTGCTGCGTGAATCGGATGATGAGTCTGAGCCAGAGGAGGAGGTAAGTAGCGTTGAGGAGAAGGGTGATGTACCCAGGGACTCGGGCTGCTTCGAGAGCACAGAAAACCTGGAGAACGGGCGCCATGAACCAGAGGGAGAGCCAGGTACAGAGCAGAAGTCTAACCAGGAGCCAGAGCAGCACCAGGTTGAAGAGGGGCAGCTGAGTTCTGTTGAGGAGCAACTGCAGGAGCTTACAGTGGACGTGGTGGTCACCTGAAAACTGAAGAGAGGCTCTGGAATTGATGAGCCTTGGTTGGTTGACTGTACTGATGGACATTTTATCAAAAGCCAACGACAATTGGTTGATTGATTCAAACTATCAGGATAGAGTGATAGTCAGGATTAAGCCATATATATTGAGAGGGAGTGTCTTTTCATTTGTGGCCTGCACACTTTTAAAACAAAGGTCACAAGGCAGCAGCCGGAGCTTCACCAGTAACTATTGGAAATGTTTTGGAAGAATACAAGACTTTTGAAAGCTTGGTGTGGTCAAGCTGTAAATATGAATTGATTGCGCAAGTGTCATCCTTTTCACTGATACCATGTCATTTGAGCAGGCCTGAGAGGATTTTGTATAAACTCAGAGCCTTCTTGTCATCTTTCCAGGCTACTATTAGACCTTAGTGAGGACATACAAATTGTAATATTCTTCAATGTGTTTTTGACCTGATATGGTCACGTATTTCATATTCCCATCAACGGATAGGTAGGAAATATACATTTTCTGTAACTTTTTAAAAAATCCTTTATTCTGTCAAGTTCTCTGTTCATTTTTAACATTTTAATTGTGTTGTAATGTTTTTTTGCATTCATGTTTTTTCATCCGTTATTTGggaaataaactgaaataaaacCATCAA

Function

GO: NA

KEGG:

id description
K23706 SASH3; SAM and SH3 domain-containing protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1398277 lncRNA downstream 124538 19823610 ~ 19823830 (-) True G1225038
TU1398276 lncRNA downstream 125893 19822221 ~ 19822475 (-) True G1225037
TU1398274 lncRNA downstream 131286 19816674 ~ 19817082 (-) True G1225035
TU1398273 lncRNA downstream 131775 19816303 ~ 19816593 (-) True G1225034
TU1398234 lncRNA downstream 171092 19777002 ~ 19777276 (-) True G1225011
TU1398371 lncRNA upstream 5993 19966693 ~ 19966917 (-) True G1225129
TU1398699 lncRNA upstream 51576 20012276 ~ 20012477 (-) True G1225429
TU1398706 lncRNA upstream 59848 20020548 ~ 20020777 (-) True G1225436
TU1398710 lncRNA upstream 66936 20027636 ~ 20027874 (-) True G1225440
TU1398714 lncRNA upstream 70086 20030786 ~ 20031085 (-) True G1225444
XM_021561455.2 mRNA downstream 102459 19789786 ~ 19845909 (-) True LOC110488958
XM_021561454.2 mRNA downstream 176697 19756005 ~ 19771671 (-) True LOC110488957
XM_036943121.1 mRNA downstream 194466 19742080 ~ 19753902 (-) False LOC110488956
XM_036943120.1 mRNA downstream 194578 19742080 ~ 19753790 (-) False LOC110488956
XM_036943118.1 mRNA downstream 194998 19742080 ~ 19753370 (-) False LOC110488956
XM_036943131.1 mRNA upstream 154825 20115525 ~ 20130254 (-) False LOC118938705
XM_036943127.1 mRNA upstream 174479 20135179 ~ 20163475 (-) False LOC110488962
XM_036943126.1 mRNA upstream 174479 20135179 ~ 20163726 (-) False LOC110488962
XM_036943130.1 mRNA upstream 174479 20135179 ~ 20165060 (-) False LOC110488962
XM_036943128.1 mRNA upstream 174479 20135179 ~ 20165062 (-) False LOC110488962
TU1398282 other downstream 112049 19835878 ~ 19836319 (-) True G1225043
TU1394921 other downstream 2549133 17398341 ~ 17399235 (-) True asb5a
TU1391998 other downstream 4630208 15317793 ~ 15318160 (-) True G1219208
TU1391564 other downstream 4953989 14993820 ~ 14994379 (-) True G1218808
TU1391105 other downstream 5390987 14556833 ~ 14557381 (-) True LOC110488886
TU1398774 other upstream 173011 20133711 ~ 20134053 (-) True G1225499
TU1398810 other upstream 361078 20321778 ~ 20325219 (-) True G1225505
TU1398964 other upstream 505030 20465730 ~ 20470523 (-) True G1225647
TU1399197 other upstream 762337 20723037 ~ 20723236 (-) True G1225875
TU1401215 other upstream 2267619 22228319 ~ 22233291 (-) True LOC110488986

Expression Profile