RNA id: TCONS_00043215


Basic Information

Item Value
RNA id TCONS_00043215
length 666
lncRNA type retained_intron
GC content 0.44
exon number 2
gene id XLOC_021787
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 31245395 ~ 31248952 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAGAAAACATCACCGTTACCAAGCATTTACAAAGAGATGAGGATCTCTTCCACATGCAGGCTGAGGTATGAAGTATCGATGCTATTTATTTGATCCTGTATAACGGAGTTATATTACATTTCATCTATAATGATGTGTTTTTTGTATGTGCAGGTGCTTGTGGTGTTTTTAGACTTTGAGAAGATGCAGCAAGCGCGCACAGTTTTGATTGAGAAACTggacaaaagtgtgtgtgttggtgACCCTTACTACAGTCACAGTGCTGAAAGCCTCAGTTTGTTAAGACGACGTGTGTGTTTGGAAGCGGTGGACAATGCCCGACTAAAAGCCAGCGAGGCGTGCTGTATTCTGGGCCAGGCTCTGGGACGTCCGCTGTTGGTCCGTGAGGAGGAATCTCGAGAGTGGAGCAGCAGTCAGCAGGATGCCTCTGGCTCTCCTCTAACACTACACCCCAGGACTGATGCTACGCTAATCTCTGCCACTTCACGCATGTTTGTCACCTTTGAACTGCGACCTAAGGACAATAACAGGAGGAAGTTTTAGTTTGttcaacaataatataattactacACATTTTTATGTATGTTAACGCCTATAAAGAACCACTGATATTCAGAAAAGAGTCCACAGTGAAGATAACACTATTTACTCCCATTGTTGTCGTAA

Function

GO:

id name namespace
GO:0007249 I-kappaB kinase/NF-kappaB signaling biological_process
GO:0006955 immune response biological_process
GO:0005634 nucleus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-272 Predicted to be involved in I-kappaB kinase/NF-kappaB signaling. Predicted to act upstream of or within immune response. Predicted to be located in cytoplasm; membrane; and nucleus. Predicted to be integral component of membrane. Orthologous to human IRAK1BP1 (interleukin 1 receptor associated kinase 1 binding protein 1).

Ensembl:

ensembl_id ENSDART00000133391

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044850 lncRNA upstream 159841 31078564 ~ 31085951 (+) True XLOC_021785
TCONS_00043203 lncRNA upstream 472906 30764287 ~ 30772886 (+) True XLOC_021777
TCONS_00044849 lncRNA upstream 812407 30402314 ~ 30433385 (+) True XLOC_021774
TCONS_00043197 lncRNA upstream 1235750 30006206 ~ 30010042 (+) False XLOC_021772
TCONS_00044851 lncRNA downstream 614949 31863739 ~ 31885913 (+) True XLOC_021795
TCONS_00043238 lncRNA downstream 779835 32028625 ~ 32038219 (+) False XLOC_021802
TCONS_00043241 lncRNA downstream 785951 32034741 ~ 32038219 (+) False XLOC_021802
TCONS_00043242 lncRNA downstream 788297 32037087 ~ 32038060 (+) False XLOC_021802
TCONS_00043249 lncRNA downstream 945618 32194408 ~ 32201494 (+) True XLOC_021805
TCONS_00043212 mRNA upstream 127421 31107685 ~ 31118371 (+) True XLOC_021786
TCONS_00043211 mRNA upstream 223374 31000243 ~ 31022418 (+) True XLOC_021784
TCONS_00043210 mRNA upstream 249036 30985530 ~ 30996756 (+) True XLOC_021783
TCONS_00043208 mRNA upstream 264354 30967686 ~ 30981438 (+) True XLOC_021781
TCONS_00043207 mRNA upstream 326485 30898013 ~ 30919307 (+) True XLOC_021780
TCONS_00043216 mRNA downstream 156707 31405497 ~ 31423729 (+) True XLOC_021788
TCONS_00043217 mRNA downstream 183166 31431956 ~ 31435922 (+) False XLOC_021789
TCONS_00043218 mRNA downstream 183188 31431978 ~ 31435922 (+) True XLOC_021789
TCONS_00043221 mRNA downstream 347404 31596194 ~ 31605592 (+) False XLOC_021792
TCONS_00043222 mRNA downstream 347651 31596441 ~ 31605307 (+) True XLOC_021792
TCONS_00043209 other upstream 266293 30979385 ~ 30979499 (+) True XLOC_021782
TCONS_00043184 other upstream 1657234 29588444 ~ 29588558 (+) True XLOC_021766
TCONS_00043178 other upstream 1882947 29357790 ~ 29362845 (+) False XLOC_021762
TCONS_00043179 other upstream 1883259 29357952 ~ 29362533 (+) False XLOC_021762
TCONS_00043174 other upstream 2319752 28925923 ~ 28926040 (+) True XLOC_021760
TCONS_00043219 other downstream 184483 31433273 ~ 31433348 (+) True XLOC_021790
TCONS_00043220 other downstream 184789 31433579 ~ 31433663 (+) True XLOC_021791
TCONS_00043223 other downstream 418639 31667429 ~ 31667543 (+) True XLOC_021793
TCONS_00043229 other downstream 684885 31933675 ~ 31940874 (+) True XLOC_021797
TCONS_00043240 other downstream 783975 32032765 ~ 32038219 (+) False XLOC_021802

Expression Profile

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