RNA id: TU1398814


Basic Information

Item Value
RNA id TU1398814
length 426
lncRNA type sense_over
GC content 0.53
exon number 1
gene id sowahd
representative True

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 20325473 ~ 20331673 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCACCAACCAAACCAAAGGTTTTATGAACATACTTGGACCCTGTCTTCACAAATGTTGCTCTCGGGGTTTGTTTTCTGGGTTGTCACAAAACTCAAGCGTATTTTGATACCCTGGTAGTTGAtaatactgtaacgaccctgggtttataagcgcggaaatcgactctgccgcacgagcatgcttttgcggcacagtcgatagcgcgccggacctcgggctcgaaggtcgagggtacgtgacctgctccctgctgtttcattacattggtgtcagaagtgggcggaccttgcatccacgacagtgcgtgtgcttgTCCGGTGAGCGCGTAAGACGTAGAGCAGCAAGCTAGCGCGAGGACGCGCTCTTTGAAAAggacgaccctgggtttataacgGTGGAAATCGAgtctgccgcacgagcatgct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1398826 lncRNA downstream 27 20330318 ~ 20331221 (-) False sowahd
TU1398802 lncRNA downstream 4352 20325473 ~ 20326896 (-) False sowahd
TU1398929 lncRNA upstream 59049 20390722 ~ 20391285 (-) True G1225615
TU1399044 lncRNA upstream 266792 20598465 ~ 20598774 (-) True G1225726
TU1399068 lncRNA upstream 292853 20624526 ~ 20624775 (-) True G1225750
TU1399072 lncRNA upstream 296817 20628490 ~ 20628741 (-) True G1225754
TU1399119 lncRNA upstream 313848 20645521 ~ 20645807 (-) True G1225800
XM_021561476.2 mRNA downstream 1168 20326726 ~ 20330080 (-) False sowahd
XM_036942651.1 mRNA downstream 14634 20315629 ~ 20316614 (-) False ndufa1
NM_001160667.2 mRNA downstream 14932 20315635 ~ 20316316 (-) False ndufa1
XM_021561474.2 mRNA downstream 22805 20304374 ~ 20308443 (-) True zbtb33
XR_005035953.1 mRNA downstream 57599 20265984 ~ 20273649 (-) True LOC110488967
XM_021561488.2 mRNA upstream 49231 20380904 ~ 20386061 (-) True LOC110488978
XM_021561493.2 mRNA upstream 144534 20476207 ~ 20564889 (-) True tnmd
trnaa-ugc-63 mRNA upstream 375872 20707545 ~ 20707619 (-) True trnaa-ugc-63
XM_036943141.1 mRNA upstream 934454 21266127 ~ 21960000 (-) False diaph2
XM_036943142.1 mRNA upstream 934454 21266127 ~ 21960001 (-) False diaph2
TU1398810 other downstream 6029 20321778 ~ 20325219 (-) True G1225505
TU1398774 other downstream 197195 20133711 ~ 20134053 (-) True G1225499
TU1398282 other downstream 494929 19835878 ~ 19836319 (-) True G1225043
TU1394921 other downstream 2932013 17398341 ~ 17399235 (-) True asb5a
TU1391998 other downstream 5013088 15317793 ~ 15318160 (-) True G1219208
TU1398964 other upstream 134057 20465730 ~ 20470523 (-) True G1225647
TU1399197 other upstream 391364 20723037 ~ 20723236 (-) True G1225875
TU1401215 other upstream 1896646 22228319 ~ 22233291 (-) True LOC110488986
TU1403347 other upstream 3538285 23869958 ~ 23873564 (-) True G1229693
TU1404303 other upstream 4225060 24556733 ~ 24561862 (-) True LOC110489025

Expression Profile