RNA id: XM_036943171.1


Basic Information

Item Value
RNA id XM_036943171.1
length 6492
RNA type mRNA
GC content 0.50
exon number 29
gene id bod1l1
representative False

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 24344340 ~ 24368050 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTTCTTCCGGTTGCATATCGTTCAACTTCCGAGTCAAATGCGTTAGTTCTAAATCAAAATACAGAGAATCTAAGGAGTTAGCAAGCGACTTTGTGGTGTTTTAATGACATTTATTATTTGGGATTTTAAATCCAGAAGCGTATAGTAACAGATGGCAGGTTTACCCCCCGGAGACCCGCAGTTGGTCTCTATGATCGTCAATCATTTGAAAACGCAAGGTCTTTTCGATCAGTTTAGAAGGGACTGCTTGGCAGACGTGGATACAAAGCCTGCATACCTGAATTTAAGACAACGAGTGGACAACTTTGTGTCCAATCACCTCTCTAACCACACATGGAGTCCTCACTTGAACAAGAATCAGTTGAGAAACAACATCCGACAGTTGGTGCTGCAGTCTGGGATGCTGGAGCAGGGAGTTGACAGGATAGTTGCTCAGGTGGTGGATCCCAAAATCCATCACACCTTCAGGCCCCAGGTGGAGAGGGTGGTCCGTGAATTCATGTCCCCTGGCAGCTATGTTGATGAACCCCCAGTCCCGCCTGCTCCTGTAGAGGAGAAACAAGACTTTGACCTGCCAGTGCAAGTTGGATTCCCAGCTCCTTCATCTGCCCCTGCTACTTCAATGGCCAGAGATGCCATGTCCATCCTGGATACCATCACCACTCTGAACCAGGAGGCCAGCTCCCGGGCCAGCTCCAGTGGAGAGAAGGGCCCGAAGGGGGGCTCTGAGAGGGACCAAGACCCAGAGGAGTCGATGCAGGAGTCTGAAGGAGGAGAGCAGGACATGagtctggtggaggagggagaagaggaccaGGACAGGAAGACAccagagaaagaagaggaagcgAAGCTTGTGTCAGAGGCCCAGACTATGGAGGTCAAAACAGAGGACGTACAGGAGCAGGTGGACtctgagagagaggggatgaagggTGAGGGGGAAGAGGTTGGGACTCAAGAGGAGgcagaagagagaaaggaggggaagaCCATAGGAAAGCTAAAAGATGAGGTACTGAACAAGGATGTTGATCCACTTCAGTCCCCCAATGAGAAACACCATATCAATCAGAAGGCCAGAGAGAGGTTAAAAGAAGAATATTCTCTGGAAGACTCCGACCTTGATGGCCTCAGTGACATCACTGTGAGCTCTGTCCACACCAGCGACCTGTCGTCCTTTGAGGAGGACAGCGATGATGAGCAGCCACCGTCAGATTCTACAGAGGACGGCGAGGTCTCATCTGAGGATGAAAAGTCTGAGAAAAAGAAGACCAATAGAGAGGAAGACAATGAGGAGAGCCCAGAGCGCAAGCCTCGTCGACAGGCCTACGTCCACAAGCCCTTCCTCTATTCCCGTTACTATAGTGACTCTGACGATGAGGTTACTGTGGAGCAGCGTCGGCGGTCAGCGGCCAAGGACAAGGAAGAGAGGCTTTTCAAGAGACAGCAGAACAGGGAACGCATGGAGGAGAAGCGTAGACAGAAGTCAGCTCAACTAGAAGACCAGGAGAGCAGGCAGCAGACCTCTTCCCCCAGCCTGGAAGTTCAGGATCCGAGGGCCAAAGAGGCTCTCAAGGAAAAGAAGGTTCTAGAGAAGAAGATGGCCCTCAGTAGGAAGAGGAAATGGGactcacgGAAAGAGGGAGATGTTACAGGCAAGAGAAAGGGAGATGCAGCAGGAGAGTTCAACAAAAAGGAAGAAGCAAAGGGTATTTCCTCAAAGAGCTTGCAGCACAAGTCAATCAGAAAAGTCTCTGAGTCTGCAGCATCAGAAGAGAGGCACAGGAGGAAGAGTGTCAGCACTTCTGAGGAATCTGGAGAACCTAGAAAGCTGGCAGACAAAAGCCGTACACATTCCTTTATCCTGGACTTGGAGCAGGGATCTGAGTCACCACTCAAACAGCGAGCTGCTGGAAAGTTTGACCGGCTTTCCCGCAAAGAGTTAAACCCTAAAGAGCGCAAGGAGAAAGAGTGTAGCCTGTCGGACGAACGCTCCAAGCTTAAGCAAAAGTTGGAGAAGAGAGTAGTAAGTGAATCCCACACAGATGAACCTGAGCAGAATGAAGGGGCCCACATTGAAGTATCCTCTGATGACAAAGGGGAGAGAAAGTCCAAGGTGAAAGGTGACAAGAAAGTGTCAGTGAATGCCAGGGAAGGTAGGGCATCTGTGTCAGAAGGAGGTGTCTCTGACGAGGGGGCTAGCAAGGAAGCCACAACCAAGAAGGGGAAGGCTCCATCAGTTGAAGCTGCCAAAgttgagaaggacagagagaaggaaaagaaCAGGGAAAatgagaaggaaagggagagaaccAAAGCAGAAAAGATTCCATTAAAAACTGACCCTAGGCAGTTACTCCGTCCGGATTCCACCGGCTCTTCTGAGGAAAGGTCTGATATGGAGCCTGGATCAGAAAGCATCAAGAAAAAGGACAAACACCCTAAAGAAGTCCTCAAGAGGTCAAAGAGCCACACAGAGGACAAATATGTAGAAAAACCCAAGTCTAAGCCAGACATTGAGAAGGAGAAACCCAGAACAGAACATGTTACTCAGGAAAACCAGAAACCAAGTAAGTCTAGCTCTGAAACTGACAAAGACTCCAGAAAGTCCAGGGAGACAGAGCCTGGAATGAAGGTAAAGGTCATGGAAAAGTCCAGATCCAAGTCAAGGGAGGATAAGAAAGCTCAAGGTTTGGAGGTCAAAAACAAAGGTAGCACATCAGGCAGTAGACCTGACGCATCAaaggaaagaaaaagagagggaagcATGAAGGAGCAAAGGAAAGACACCCAGGAAAACCCACCAGAGAAAATGGAAGGCAGGAGTGGGAAGAAAATGCTTGATAAAAAGGCCCAAAACCCAGAGAAGAAAGAGACCCAGGATGAGAGAAAAGGACGTAAAGCAGATGAAAAGTCGGATAAGTCCTCAATCTCCTCACCTGCTATTACGGAACCTCCTCTGAAGAAAGGCCCTCAATCCAAAGACGCAAGCACAGACTGGGATCCCACCGATGCCACCATTACCACCTCTGCCTCTGTTACCTATGATGCTTTGAGTGACGTCACCCCTGAACTGGAGGAGGATGACAGTGAAATGCCACTCGGTGAGGTGGAACCACGTCCTTTGACAACTGGGGCAGATGCTCTTCTGACGTTGATGGACATCTGTACCTCAGCAGATGCAAGACTAGGCCAAGGAAGTGACATCACAGGGGCCATGCAGCGAGAGGCCTGCCCAGAGCTCTCCTTCCAAGAAGCAGACATAAAAATGAAAGAGGCAGCTCTGACCCTGCTCTCCATGGACCCTGAGAGTATACTATCTCCTACCTTAGTCACTCCAGCTACACAGGACGTCACAGAGGCAACCATACCTGCTCTGCAGCGAAAGGAAACTGCTAAACGTGTTGCAAAAGATCAGGAAGATTCTGAGCATGTTCTAGAAATGGACGAAAGTGATCTAACAGCTACTGCCTCATCAGAGAAAATGGATGAACAGTCAAGGAGCCAAGGTAATGTGTCTTTCGATGTTCTGGCCACAGATATTCTCGACACAGGGGGGAAAGATACGGTGGTGTCAACATGGACATTAGTTGAAGGGATGTCTCAGGAAAATAAATCTACTGTTGACAGAGATGAGGAAAAACCAGGCCATGCTGATGTTGTTCCTGAGCAAGAGCCCGTATTGGGACCATCAGTCGACAAACAATATGAGACTCAGACTGAGAAGACAAAATTGCTGGCCATGGAACATGAGTGTCAGGTTAAGATGGACATTGATAACATTAATAAAGACCAGACTGAAGCACAAGAGGAAAATGGAGTCACTGAGTCTGGGAAGTGTGACACACCTGAAAAACCAAGGGAGACTCGACGTGGTCGGCCATCAAAGCTGGTCAAACATGCCAGCAATGCATCCAAGTCAGACGGACAAGAGGACGAGAAAGGATCTGACCTGTCTGAAATGGAGGACAAAATGGAGGGAAGAGTAACCCGCAAAGGAAGGCTATCCGGTCAGAAAGTTACCACGGCCAAAGACTCCGCTATGGAGAAAAATGAGAAGGACAGTCAAGAGCAGCAGTCCAAGCTGGCTGTGGAAGTGAGTAAAGACAATGCGGGTGATAGGGCCACAGATTCCAGAACGCCACGCAGAGGACGCTCGTCTAAAACCTTTGCGGATGAGGAGGAACTTAAAGAGcCTGAGAAAGTGGAGGAGACCCCGCCTCGCAGAGGCAGACGGTCAGGTGCCCAGGCCAAAGACTCCACCACAGGAAaccaggagaaagaggaggaagagaaaacaggagagacaTCATCGGAAAAGCCAAAGGAGAAACAGGAGattcatccccctcttcaaaaagatgaggaggaggaggaggaggaggaggaggagaagaagaagagtgaGCAGAAGAGAGGCAGTAGACGGGGAAGACCAGCTAAACCTCCAATCTCCAAGAAAAAGACAAATGAAGATGCAGAAAGCTCTCCTTCCAAGGAGCCCACTGATACTCGCAAACCTGCAGTGAAGAGGAAGAGGTCTGAGGAATCTGGGGAGGGGACCCAGCCTGAGGAGGAGGGGACCCAGCCTGAGGAGGAGGGGACGCAGCCTGAGGAGGAGGGGACGCAGCCTGAGGAGGAGGGGACGCAGCCTGAGGAGGAGGGGACGCAGCCTGAGGAGGAGGGGACCCAGCCTGAGGAGGAGGGGACCCAGCCTGAGGAGGAGGGGACCCAGCCTGAGGAGGAGGGGACCCAGCCTGAGGAGGAGGGGACCCAGCCTGAGGAGGAGGGGACCCAGCCTGAGGAGGAGGGGACCCAGCCTGAGGAGGAGGGGACCCAGCCTGAGGAGGAGGGGACCCAGCCTGAGGAGGAGGGGACCCAGCCTGAGGAGGGGGGGACCCAGCCTGAGGAGGGGGGGACCCAGCCTGAGGAGGGGGGGACCCAGCCTGAGGAGGGGGGGACCCAGCCTGAGGAGGGGGGGACCCAGCCTGAGGAGGAGGGGACCCAGCCTGAGGAGGAGGGGACCCAGGAAAGTGACCTGAAGGAACAAGAGGAGAAACAACATGGAGAGGATAGCGTGAGCCAGTCTGACGACCCGGAGAAGGGGACAGAAGAGGGCTCCAGTGATAACAAAACAGATGAGGGTGAGGAGGACAAAGACACGCCTCAGAAGAAACCTGCTCGTAGGGGAAGGCCCTCGAAGGGAGCAACATTGACGTCAGAGGAACCGGAAAATACCGTATCTGAGAAGACCGACAAAAAGCCAGACAAGAAAGAGAGCGAACAaaaagaggatgaagaggaggaagagacgcCTAAATCCAGAACTGCGACTCGAGCTGCTGTTCGCCTTGAAGCTGAGAGGAACAAACCAAGGAAACCTTCCACCCGAGCTCGAGGTGAAGAGGAGAACCCAGCAAACACACGTGGGATGAGAGGACAGGCCTCGACATCAGCTAAGGCAGGGGGGCGTAAACGTGAAGCCAGCCCCCCAGCAGTGCGCACCAGAGGTGGACAAAAATCTGAGGAGCCCTCTTCCAAAAAGACCAAGCGATGAACAAATACCTGCTTTCCCCAAGCCCAGGTATTAGAATATTCACAGCGCTGTTGACATGAGTTTTTTTGAGTTTTAAATGCTTCTTtgtttttagaaacacttcacaTAAAACATACCGGTATTAATTTTAACAGATCTGAACCTCTCCCCTCTATTCAAGCCTGTGGATGTGTTGGATAGGAACATTTGGGGATGGCATGACAGAATGGTCTAGCAGTAGTGGTTCTCCAAACAGTCACCTGACCTGGATTTAGCTCATGGTGCTTTCCATTTCTATACAGTATTATAGACCCTTCACCATAGGCCCATATGTTTTAGATTGCACTGGTCATTTTAAAGATGTTAGCTAATAATATCTCATGAAACGGAGCATTAGAGACCAATCAAAGGTCTTATGTGGAGAGCCTCATTGACTTTAATCCTAGGACAAAACACTGGAAATTCTTTGTCACTGACAAATCGACTTCTGTCTGTGTTGGTCACTCCAAGGATTTGCTGTCGTGCAGGCATATGTTCTTTGGTTCCTGCGTCACGTTCAAGGGTTTTATATTTCTTTGACCTATAGATACATTTAGATATCATTCATATAGAGTTGTATAGAAGTTATTAACCTGGGTATAGTCTCACAAGTACTTTTACAATTTGTGTTATGTTTTTGCTCATTGTTTCCGTACCCAGAAGCCTCTTCCTGTTACTGGACTTGAACATGGAAGTATCCATTCTATGAATGTAAAGGAGGTGTTTGTCTTCTCCCtgtgtttttattttcttctGTTATTTTGTTTTTTACTACACAGATTTGTCTGTGCTCCTAACTACTTTCCCCATTAAGTGATTTCTATTTTTGGTTATTTTTGTAACGTGTGCTCACAGAGCTTATGCCCTGTTGTCAGTATTGGAAGAGATTAAATCCCTTTCAAATGGTGAACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1403778 lncRNA downstream 146423 24197680 ~ 24197917 (-) True G1230104
TU1403775 lncRNA downstream 151112 24192874 ~ 24193228 (-) True G1230101
TU1403774 lncRNA downstream 151770 24192358 ~ 24192570 (-) True G1230100
TU1403767 lncRNA downstream 157982 24186116 ~ 24186358 (-) True G1230093
TU1403748 lncRNA downstream 183251 24160477 ~ 24161089 (-) True G1230074
TU1403873 lncRNA upstream 1907 24369957 ~ 24370311 (-) True G1230196
TU1404238 lncRNA upstream 29040 24397090 ~ 24397317 (-) True G1230528
TU1404241 lncRNA upstream 31433 24399483 ~ 24403326 (-) True G1230530
TU1404227 lncRNA upstream 31716 24399766 ~ 24404614 (-) True G1230517
TU1404246 lncRNA upstream 38350 24406400 ~ 24406655 (-) True G1230535
XM_021561558.2 mRNA downstream 9067 24333188 ~ 24335273 (-) True nkx3-2
XM_036943170.1 mRNA downstream 20669 24226819 ~ 24323671 (-) True LOC110487753
XM_021561557.2 mRNA downstream 385475 23955890 ~ 23958865 (-) True hs3st1
XM_021561556.2 mRNA downstream 385499 23955890 ~ 23958841 (-) False hs3st1
XM_036943626.1 mRNA downstream 407368 23935691 ~ 23936972 (-) True LOC110487751
XM_021561563.2 mRNA upstream 94545 24462595 ~ 24465973 (-) True LOC110489019
XM_021561564.2 mRNA upstream 108558 24476608 ~ 24479197 (-) True LOC110489021
XM_021561566.2 mRNA upstream 113625 24481675 ~ 24495562 (-) True mcm7
XM_036943179.1 mRNA upstream 129330 24497380 ~ 24537328 (-) True LOC110487755
XM_021561573.2 mRNA upstream 189036 24557086 ~ 24558257 (-) False LOC110489025
TU1403347 other downstream 470776 23869958 ~ 23873564 (-) True G1229693
TU1401215 other downstream 2111049 22228319 ~ 22233291 (-) True LOC110488986
TU1399197 other downstream 3621104 20723037 ~ 20723236 (-) True G1225875
TU1398964 other downstream 3873817 20465730 ~ 20470523 (-) True G1225647
TU1398810 other downstream 4019121 20321778 ~ 20325219 (-) True G1225505
TU1404303 other upstream 188683 24556733 ~ 24561862 (-) True LOC110489025
TU1404397 other upstream 339911 24707961 ~ 24709307 (-) True LOC110489477
TU1406122 other upstream 1735296 26103346 ~ 26162772 (-) False G1232240
TU1406154 other upstream 1736042 26104092 ~ 26165403 (-) False G1232240
TU1406145 other upstream 1736487 26104537 ~ 26123887 (-) False G1232240

Expression Profile