RNA id: XM_021559665.2



Basic Information


Item Value
RNA id XM_021559665.2
length 863
RNA type mRNA
GC content 0.43
exon number 4
gene id LOC110487758
representative True

Chromosome Information


Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 24904552 ~ 24906407 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATGTACCATTTAGGCAAGAATCCCCAGAGGTCTGATTACAAGACCGTGGTACAGAGGTCAGTGTCTGACCAATTCCACCCAGGAGAAAATGTGACTCTGCAGTGTACAGTGCTCTCTGAGGCCTGTACAGGAGAACACAGTGTGTACTGGTTCAGAATTGGATCAGGAGAATCCCATCCAGGAGTCATTTACACCCCTGGAAACAGGAGAGATGAGTGTGAGAAGAGCCCTGAGACTCCTTCTCCTACACAGAGCTGTGTCTACAGCCTCTCCAAGAACAACCTCAGCCCCCCTGATGCTGGGACTTACTACTGTGCTGTGGCCATATGTGGGGAGATCCTTTTTGGCAAAGGAACAGAATTGGACCTGGCCAGTAACACGGAGGTGAATGTGTCAGAAATGGCTCTGGTAGTGGTTGTTGTAGGTTTGACAGTGGCGTTGGTGTTGTGTGGGATTGGGATCATGTTCCTTGTCTGCACCAGACCAAAAGAGCAAATCTGTGAAAATTGCAAAGCAGTGGGTGCCTCTCAGGTTGGCAGACAAGACAGATTACGTGGAGAAGAGGATCAAGATGGAGATACGTTGAATTATGCTGCATTGAATTTCTCTGAGAAGAAAActaaaagagggagaaagaagagagagacaccacaggagaGTGTGTACTCTGATGTCAGGTGTTAAGGCTAGGACGAACTTAGCTTAATCATTCTAAAATGTAGTGTTAATAATACATTTGTCTTTTAAATGTATTAGTCAGTGCCCCTTGTACAAAGATAATTAGAAAATATGAGAATTTGACAAATGTAATAAATGTTTGATAAAAATCATGATCAATCAGAACACAAATTAACAAATTGAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1404404 lncRNA downstream 146952 24712666 ~ 24757600 (-) True G1230669
TU1404335 lncRNA downstream 189080 24606138 ~ 24715472 (-) True G1230609
TU1404307 lncRNA downstream 222537 24599526 ~ 24682015 (-) True LOC110489029
TU1404530 lncRNA upstream 12307 24918714 ~ 24919016 (-) True G1230781
TU1404588 lncRNA upstream 40065 24946472 ~ 24999719 (-) True G1230836
TU1404616 lncRNA upstream 75559 24981966 ~ 24985703 (-) True G1230863
TU1404586 lncRNA upstream 82205 24988612 ~ 25003124 (-) False G1230835
TU1404587 lncRNA upstream 82205 24988612 ~ 24994210 (-) True G1230835
XM_021561579.2 mRNA downstream 30886 24871941 ~ 24873666 (-) True LOC110489031
LOC118938708 mRNA downstream 40064 24862944 ~ 24864488 (-) True LOC118938708
XM_021562175.2 mRNA downstream 195281 24706395 ~ 24709271 (-) False LOC110489477
XR_002468511.2 mRNA downstream 223125 24599699 ~ 24681427 (-) False LOC110489029
XM_021561569.2 mRNA downstream 324015 24563389 ~ 24580537 (-) True LOC110489023
XM_036943634.1 mRNA upstream 627664 25534071 ~ 25534394 (-) True LOC118938754
XM_021561580.2 mRNA upstream 690964 25597371 ~ 25976803 (-) False LOC110489032
XM_036943184.1 mRNA upstream 690964 25597371 ~ 25979494 (-) False LOC110489032
XM_036943185.1 mRNA upstream 752090 25658497 ~ 25976797 (-) True LOC110489032
XR_005035959.1 mRNA upstream 1663787 26570194 ~ 26586161 (-) True LOC118938709
TU1404397 other downstream 195245 24707961 ~ 24709307 (-) True LOC110489477
TU1404303 other downstream 342690 24556733 ~ 24561862 (-) True LOC110489025
TU1403347 other downstream 1030988 23869958 ~ 23873564 (-) True G1229693
TU1401215 other downstream 2671261 22228319 ~ 22233291 (-) True LOC110488986
TU1399197 other downstream 4181316 20723037 ~ 20723236 (-) True G1225875
TU1406122 other upstream 1196939 26103346 ~ 26162772 (-) False G1232240
TU1406154 other upstream 1197685 26104092 ~ 26165403 (-) False G1232240
TU1406145 other upstream 1198130 26104537 ~ 26123887 (-) False G1232240
TU1406141 other upstream 1216423 26122830 ~ 26157591 (-) False G1232240
TU1406144 other upstream 1216423 26122830 ~ 26165298 (-) False G1232240

Expression Profile