RNA id: TCONS_00043261


Basic Information

Item Value
RNA id TCONS_00043261
length 681
RNA type mRNA
GC content 0.43
exon number 8
gene id XLOC_021811
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 32426954 ~ 32434933 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTTGGTGCACAAGCTGAGCCTGATCATTTGTAAGTCTTTCATTTTACCTTCTCACATACCTGCAGGTGTAGACGCTAAAAGAACAGTCACTTGTGAAGGAGGATCTGCACACCTCAGCTGTGGTAAAAAACAATCAATTAACTCCCCCaaattgtgtatttACTTGGGATTCGTAAAAGTCCTTGAAGCTAACTTTGGACGGACGGATCGTACAACATGCATTAGTGGGAGACCAGCAAATCAGATCAACAATGTACACTGCTTTAGAGAATCATCCCTCAGTACAATGTCAGCTCGGTGTGATGGAATTAAAAGCTGTTCAGTTCCTGCAGTGAACTCAGTTTTCTCTGATCCTTGTTTTGGAACTCATAAATTCCTGGATATTACGTATGACTGCATCCCATCAAAAAGAAGTGTAACCTGTGAAAATACCCAAAGTGTAATCGTTTGTGGTTCTGGTGTTATTTTGGTTCATTATGCCAACTATGGACGCCGTGATCTCTCCACCTGCCCTCATAAATTGGCAAAGACACCACACTGCTACTCTCCTCAGACCAGCAGCCTGCGCTCCAGATGCAATGGGAAGAAGTCTTGTTCTCTGAGCGCTTCAAATTCTCTCTATTCTGATCCATGCCCGCGTGTCAACAAGTATCTGGAAGTGACATACAGCTGTGTATAA

Function

GO:

id name namespace
GO:0030246 carbohydrate binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090313-122 Predicted to enable carbohydrate binding activity.

Ensembl:

ensembl_id ENSDART00000192529

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044854 lncRNA upstream 8130 32392493 ~ 32418824 (+) False XLOC_021809
TCONS_00043257 lncRNA upstream 17027 32406356 ~ 32409927 (+) False XLOC_021810
TCONS_00043252 lncRNA upstream 29110 32392520 ~ 32397844 (+) False XLOC_021809
TCONS_00044853 lncRNA upstream 173877 32250356 ~ 32253077 (+) True XLOC_021807
TCONS_00044852 lncRNA upstream 213594 32210258 ~ 32213360 (+) True XLOC_021806
TCONS_00044855 lncRNA downstream 50212 32480330 ~ 32487726 (+) True XLOC_021812
TCONS_00044677 lncRNA downstream 132492 32562610 ~ 32562814 (+) True XLOC_021814
TCONS_00044856 lncRNA downstream 146932 32577050 ~ 32579434 (+) True XLOC_021815
TCONS_00044857 lncRNA downstream 1025445 33455563 ~ 33459265 (+) True XLOC_021820
TCONS_00043283 lncRNA downstream 1548593 33978711 ~ 33983432 (+) True XLOC_021831
TCONS_00043255 mRNA upstream 3606 32392612 ~ 32423348 (+) False XLOC_021809
TCONS_00043254 mRNA upstream 3606 32392612 ~ 32423348 (+) False XLOC_021809
TCONS_00043253 mRNA upstream 5068 32392542 ~ 32421886 (+) False XLOC_021809
TCONS_00043256 mRNA upstream 17026 32406009 ~ 32409928 (+) False XLOC_021810
TCONS_00043258 mRNA upstream 17208 32406461 ~ 32409746 (+) False XLOC_021810
TCONS_00043263 mRNA downstream 69798 32499916 ~ 32532612 (+) True XLOC_021813
TCONS_00043267 mRNA downstream 866470 33296588 ~ 33309622 (+) True XLOC_021818
TCONS_00043269 mRNA downstream 953465 33383583 ~ 33444055 (+) False XLOC_021819
TCONS_00043270 mRNA downstream 983686 33413804 ~ 33444055 (+) True XLOC_021819
TCONS_00043272 mRNA downstream 1288484 33718602 ~ 33729552 (+) True XLOC_021822
TCONS_00043260 other upstream 5204 32412534 ~ 32421750 (+) True XLOC_021809
TCONS_00043259 other upstream 17027 32407195 ~ 32409927 (+) True XLOC_021810
TCONS_00043247 other upstream 319473 32101211 ~ 32107481 (+) False XLOC_021804
TCONS_00043240 other upstream 388735 32032765 ~ 32038219 (+) False XLOC_021802
TCONS_00043229 other upstream 486080 31933675 ~ 31940874 (+) True XLOC_021797
TCONS_00043264 other downstream 688892 33119010 ~ 33119124 (+) True XLOC_021816
TCONS_00043265 other downstream 860155 33290273 ~ 33290361 (+) True XLOC_021817
TCONS_00043266 other downstream 864515 33294633 ~ 33309585 (+) False XLOC_021818
TCONS_00043268 other downstream 951036 33381154 ~ 33420840 (+) False XLOC_021819
TCONS_00043271 other downstream 1107933 33538051 ~ 33538169 (+) True XLOC_021821