RNA id: TU1374104


Basic Information

Item Value
RNA id TU1374104
length 673
RNA type TUCP
GC content 0.55
exon number 1
gene id G1202826
representative True

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 940502 ~ 941174 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gggcgcgaagaacgggcttgatacaggagacatggaagaccgggtggacgcgacgaaggtattgcggaagaagaagtcgaactgcgacaggattaatgacctgagaaatacggaacggaccaatgaaccgcggggtcaacttgcgagaagtggtcttaaggggaaggttctgagtggagagccaaactctctgaccgcgacaatatctaggactcttagttctacgcttattagcagccctcacagtctgcgccctataacggcaaagtgcagacctgaccctcttccaggtgcgctcgcaacgttggacaaaagcctgagcggaggggacgctggactcggcgaactgagatgagaacagcggaggctggtacccgaggctactctgaaaaggagatagcccggtcgcagacgaaggaagcgagttgtgggcgtattctgcccaggggagcggttctgaccaagacgcagggttgcgaaaagaaagactgcgtaagatgcgaccaatagtctgattggcccgttctgcttgaccgttagactgggggtgaaagccggaagagagactgacggaagccccaatcaaacggcaaaactccctccaaaattgagacgtgaattgcggacctctgtccgaaacgacgtctgacggaaggccatgaattctgaaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1374103 lncRNA upstream 719 939357 ~ 939783 (+) True G1202825
TU1374094 lncRNA upstream 6353 933948 ~ 934149 (+) True G1202816
TU1374027 lncRNA upstream 45154 895140 ~ 895348 (+) True G1202751
TU1374014 lncRNA upstream 61760 878475 ~ 878742 (+) True G1202741
TU1374001 lncRNA upstream 69545 870677 ~ 870957 (+) True G1202728
TU1374107 lncRNA downstream 492 941666 ~ 941948 (+) True G1202829
TU1374111 lncRNA downstream 7953 949127 ~ 949367 (+) True G1202833
TU1374153 lncRNA downstream 29928 971102 ~ 971561 (+) True G1202875
TU1374183 lncRNA downstream 51770 992944 ~ 993166 (+) True G1202905
TU1374187 lncRNA downstream 57677 998851 ~ 999217 (+) True G1202909
XR_005035891.1 mRNA upstream 169756 762890 ~ 770746 (+) True LOC110488511
XM_036942667.1 mRNA upstream 179875 750392 ~ 760627 (+) False si:ch211-255i20.3
XM_036942666.1 mRNA upstream 179875 757712 ~ 760627 (+) False si:ch211-255i20.3
XM_036942665.1 mRNA upstream 179875 757759 ~ 760627 (+) False si:ch211-255i20.3
XM_036942663.1 mRNA upstream 188882 732078 ~ 751620 (+) False LOC110512013
XM_021560775.2 mRNA downstream 166615 1107789 ~ 1116632 (+) False LOC110488542
XM_021560777.2 mRNA downstream 1016142 1957316 ~ 1961986 (+) True LOC110488544
XM_036942670.1 mRNA downstream 1369893 2311067 ~ 2321285 (+) False LOC110488545
XM_036942671.1 mRNA downstream 1369893 2311067 ~ 2321285 (+) False LOC110488545
XM_021560778.2 mRNA downstream 1369894 2311068 ~ 2321285 (+) False LOC110488545
TU1373752 other upstream 179808 759531 ~ 760694 (+) True si:ch211-255i20.3
TU1376790 other downstream 2210530 3151704 ~ 3152733 (+) False LOC110488551
TU1377037 other downstream 2233328 3174502 ~ 3175230 (+) True G1205631
TU1378538 other downstream 3386379 4327553 ~ 4394040 (+) False LOC110488581
TU1379128 other downstream 3980967 4922141 ~ 4922560 (+) True G1207553
TU1380535 other downstream 4962747 5903921 ~ 5907769 (+) True G1208884

Expression Profile