RNA id: TCONS_00044685


Basic Information

Item Value
RNA id TCONS_00044685
length 839
lncRNA type antisense_over
GC content 0.47
exon number 2
gene id XLOC_021889
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 37113287 ~ 37118114 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCTTGTTCGTCCACAGCTAAAGCCCACGAGTCGGTTGACATGGCTTAATCGCAGATATATTAACTTTTTAACCGGTCTTGATAACTCTTCTGATGATGACGGACTGTTCACTTCACGCGGCTTCACGAGAATGTGCACACTGCCAGCGCGCGCTCACAGAACGCTGTCCGGCCGGAAGTTATTATTACACGATGCCCAGTTCCAGATTATTAACTTCGACCTATGAACCACCGCAGCCCTCTGTAAATCCCAGCAGACGAGATAAGGGACGTTCAGGAAGAGCGagtgagcaagagagagagaaagagagacagtaAATAGCACATGTTAATTTAATTGAGCAACAGAAGCTGAGATTCGAGCCAAAGCAGCGCACATcactaaccacacacacacacacacacacacacacactttctccaaccaaccaacctgttGTCTTTTAAGAAGCCCTGGAGGCTCCATATTGATTGTCATGGTTACGTCCTCTGCAAAAGCAGATTAATCAGACGCCACAGCCATGAAATgcattcataaaataataataaatcaacgCCTGTCATATTGAAACCAAGATAGTGAGCTTAGGAAAGCATGAATGATTGaaggaaaatttaaataaataaaacgtcagTCTGAATCCTTCGCATCATCTGTGATCTCTCACCCTCCCCTCATTTCCCCCCCTCATGCATGGTGTTGCATTTCAGCCCGTGGTACCCTATCAAATAGGATACATGAATGGGCTCTCGTCACTGATTACGGAGAGACCGAGAGGTGGGGGAGAGCTGGTAGGTGGGTGGTACAGATGCTGAGGGGAGAATTGAGCGTTGGCGGGG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044877 lncRNA upstream 74878 37026350 ~ 37038409 (+) True XLOC_021887
TCONS_00043359 lncRNA upstream 217918 36891729 ~ 36895369 (+) True XLOC_021886
TCONS_00044876 lncRNA upstream 267307 36842632 ~ 36845980 (+) True XLOC_021885
TCONS_00044684 lncRNA upstream 527536 36585179 ~ 36585751 (+) True XLOC_021878
TCONS_00044683 lncRNA upstream 641452 36460041 ~ 36471835 (+) False XLOC_021876
TCONS_00044878 lncRNA downstream 109067 37227181 ~ 37277704 (+) False XLOC_021891
TCONS_00043364 lncRNA downstream 109092 37227206 ~ 37433229 (+) False XLOC_021891
TCONS_00044879 lncRNA downstream 109104 37227218 ~ 37297945 (+) False XLOC_021891
TCONS_00044880 lncRNA downstream 109104 37227218 ~ 37433229 (+) False XLOC_021891
TCONS_00044881 lncRNA downstream 109110 37227224 ~ 37433229 (+) False XLOC_021891
TCONS_00043362 mRNA upstream 19082 37090889 ~ 37094205 (+) True XLOC_021888
TCONS_00043360 mRNA upstream 23106 37086159 ~ 37090181 (+) False XLOC_021888
TCONS_00043357 mRNA upstream 314667 36771593 ~ 36798620 (+) True XLOC_021883
TCONS_00043356 mRNA upstream 362986 36730713 ~ 36750301 (+) True XLOC_021882
TCONS_00043355 mRNA upstream 457647 36653376 ~ 36655640 (+) True XLOC_021881
TCONS_00043363 mRNA downstream 67133 37185247 ~ 37198890 (+) True XLOC_021890
TCONS_00043365 mRNA downstream 205848 37323962 ~ 37325961 (+) True XLOC_021893
TCONS_00043369 mRNA downstream 326819 37444933 ~ 37453984 (+) True XLOC_021895
TCONS_00043370 mRNA downstream 340488 37458602 ~ 37466323 (+) False XLOC_021896
TCONS_00043371 mRNA downstream 348853 37466967 ~ 37480785 (+) True XLOC_021897
TCONS_00043361 other upstream 20164 37086165 ~ 37093123 (+) False XLOC_021888
TCONS_00043358 other upstream 322955 36790223 ~ 36790332 (+) True XLOC_021884
TCONS_00043352 other upstream 622053 36491114 ~ 36491234 (+) True XLOC_021877
TCONS_00043345 other upstream 802869 36307661 ~ 36310418 (+) False XLOC_021870
TCONS_00043339 other upstream 983195 36130001 ~ 36130092 (+) True XLOC_021866
TCONS_00043368 other downstream 320720 37438834 ~ 37438950 (+) True XLOC_021894
TCONS_00043373 other downstream 374621 37492735 ~ 37492851 (+) True XLOC_021899
TCONS_00043375 other downstream 620749 37738863 ~ 37798412 (+) False XLOC_021904
TCONS_00043376 other downstream 632220 37750334 ~ 37768156 (+) True XLOC_021904
TCONS_00043378 other downstream 733716 37851830 ~ 37854622 (+) True XLOC_021906

Expression Profile

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