RNA id: TU1389527


Basic Information

Item Value
RNA id TU1389527
length 233
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G1216890
representative True

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 13153276 ~ 13153508 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTCTTTGAGGCCCTTCAAGGATGAAGATTGACAAAGCATTAAGAGTAAATTGATACTTTTATCTCTAATCCTTTACATTTGTAGGCCCTTAATCATTTAGATTTTGAAGCTAACAATTCAATGACCATAATAAATAGGTATGGTGTCAGAGGGCAACCTTGTTTTACGCTTCTTGACAATTCAAAGTTCTCAGCGACGTAACCGTTATTTATTGTTTTACATAAGCGATTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1389483 lncRNA downstream 28227 13122206 ~ 13125049 (-) True LOC110488833
TU1389488 lncRNA downstream 40891 13107379 ~ 13112385 (-) False med19a
TU1389490 lncRNA downstream 40891 13107379 ~ 13112385 (-) True med19a
TU1389478 lncRNA downstream 73408 13079662 ~ 13079868 (-) True G1216849
TU1389460 lncRNA downstream 74984 13077461 ~ 13078292 (-) True G1216831
TU1389491 lncRNA upstream 5202 13158710 ~ 13160464 (-) False LOC110488836
TU1389492 lncRNA upstream 5202 13158710 ~ 13163538 (-) True LOC110488836
TU1389557 lncRNA upstream 47590 13201098 ~ 13202373 (-) True G1216906
TU1389584 lncRNA upstream 61571 13215079 ~ 13266417 (-) True G1216925
TU1389599 lncRNA upstream 72503 13226011 ~ 13227315 (-) True G1216938
XM_036942977.1 mRNA downstream 8099 13122200 ~ 13145177 (-) False LOC110488833
XM_021561255.2 mRNA downstream 36858 13114642 ~ 13116418 (-) True si:dkey-6i22.5
XM_036942976.1 mRNA downstream 38779 13111341 ~ 13114497 (-) False med19a
XM_021561254.2 mRNA downstream 38779 13111342 ~ 13114497 (-) False med19a
XM_036942970.1 mRNA downstream 141565 12988264 ~ 13011711 (-) True ssrp1a
XM_036942978.1 mRNA upstream 171 13153679 ~ 13158474 (-) False LOC110488835
XM_021561257.2 mRNA upstream 171 13153679 ~ 13158596 (-) True LOC110488835
XR_002468487.2 mRNA upstream 5172 13158680 ~ 13160654 (-) False LOC110488836
XR_005035930.1 mRNA upstream 5172 13158680 ~ 13160734 (-) False LOC110488836
XR_002468489.2 mRNA upstream 5172 13158680 ~ 13164667 (-) False LOC110488836
TU1389002 other downstream 310523 12841496 ~ 12842753 (-) True G1216443
TU1388924 other downstream 324624 12823646 ~ 12828652 (-) True LOC110488817
TU1388712 other downstream 584611 12563925 ~ 12568665 (-) True LOC110488811
TU1388536 other downstream 674809 12478019 ~ 12478467 (-) True G1216013
TU1387944 other downstream 1176499 11964493 ~ 11976777 (-) True G1215447
TU1390042 other upstream 530276 13683784 ~ 13711668 (-) False LOC110488853
TU1390045 other upstream 551755 13705263 ~ 13714877 (-) True LOC110488853
TU1391105 other upstream 1403325 14556833 ~ 14557381 (-) True LOC110488886
TU1391564 other upstream 1840312 14993820 ~ 14994379 (-) True G1218808
TU1391998 other upstream 2164285 15317793 ~ 15318160 (-) True G1219208

Expression Profile