RNA id: TU1390012


Basic Information

Item Value
RNA id TU1390012
length 233
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G1217339
representative True

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 13667636 ~ 13667868 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcattaggaacatctgctctttccatgacaaagtgaccatccaggtgaaagctatgattccttattgaagtcacatgttaaatccacttcaaccagtgtagatgaaggggacgagacaggataaagaaggatttttaagccttgagacaattgagctatggattgtgtatgtgtgccattccgagggtgaatgggcaaggcaaaaaatgtaagtgccctAGAACGAagtatag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1390008 lncRNA downstream 3033 13664336 ~ 13664603 (-) True G1217335
TU1390000 lncRNA downstream 17787 13649598 ~ 13649849 (-) True G1217327
TU1389999 lncRNA downstream 19309 13648125 ~ 13648327 (-) True LOC118938697
TU1389704 lncRNA downstream 255476 13411896 ~ 13412160 (-) True G1217034
TU1389561 lncRNA downstream 350776 13243821 ~ 13316860 (-) True G1216909
TU1390023 lncRNA upstream 12669 13680537 ~ 13680876 (-) True G1217349
TU1390024 lncRNA upstream 13402 13681270 ~ 13681500 (-) True G1217350
TU1390025 lncRNA upstream 14656 13682524 ~ 13682754 (-) True G1217351
TU1390046 lncRNA upstream 21252 13689120 ~ 13694407 (-) True LOC110488852
TU1390181 lncRNA upstream 95537 13763405 ~ 13764612 (-) True LOC110488856
XR_005035932.1 mRNA downstream 6360 13645835 ~ 13661276 (-) False LOC118938697
XM_036943000.1 mRNA downstream 266962 13391685 ~ 13400674 (-) True LOC110488850
XM_036942999.1 mRNA downstream 266963 13391685 ~ 13400673 (-) False LOC110488850
XM_021561274.2 mRNA downstream 270930 13391685 ~ 13396706 (-) False LOC110488850
XM_036943001.1 mRNA downstream 271193 13391685 ~ 13396443 (-) False LOC110488850
XM_036943011.1 mRNA upstream 15155 13683023 ~ 13697209 (-) False LOC110487738
XM_036943012.1 mRNA upstream 15155 13683023 ~ 13697209 (-) True LOC110487738
XM_036943013.1 mRNA upstream 19759 13687627 ~ 13704031 (-) False LOC110488852
XM_036943014.1 mRNA upstream 29357 13697225 ~ 13701842 (-) False LOC110488852
XM_021561278.2 mRNA upstream 29357 13697225 ~ 13704008 (-) False LOC110488852
TU1389002 other downstream 824883 12841496 ~ 12842753 (-) True G1216443
TU1388924 other downstream 838984 12823646 ~ 12828652 (-) True LOC110488817
TU1388712 other downstream 1098971 12563925 ~ 12568665 (-) True LOC110488811
TU1388536 other downstream 1189169 12478019 ~ 12478467 (-) True G1216013
TU1387944 other downstream 1690859 11964493 ~ 11976777 (-) True G1215447
TU1390042 other upstream 15916 13683784 ~ 13711668 (-) False LOC110488853
TU1390045 other upstream 37395 13705263 ~ 13714877 (-) True LOC110488853
TU1391105 other upstream 888965 14556833 ~ 14557381 (-) True LOC110488886
TU1391564 other upstream 1325952 14993820 ~ 14994379 (-) True G1218808
TU1391998 other upstream 1649925 15317793 ~ 15318160 (-) True G1219208

Expression Profile