RNA id: TU1390885


Basic Information

Item Value
RNA id TU1390885
length 229
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G1218156
representative True

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 14340847 ~ 14341075 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCTTATTCGTAAACTAAGGGAAACGGGATGTTAGCACAATGTAAGTAATGGTGAATACTGTATCTCACAGTCCAAAGTTTTCACTCAACTGGCCTTTACTATGTATAAATGCAACAATATTTTGAATGTTATTCCAAAGGAGCAATCTGGAGAGCAATACCTGAAGCCCGAGAGATGAAGTCTGGACTTAATGGACAATCATCATATGGATACATTTTCTCTCTGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1390878 lncRNA downstream 7875 14332616 ~ 14332972 (-) True G1218149
TU1390835 lncRNA downstream 80999 14257408 ~ 14259848 (-) True G1218109
TU1390806 lncRNA downstream 146034 14194592 ~ 14194813 (-) True G1218082
TU1390788 lncRNA downstream 206146 14134260 ~ 14134701 (-) True G1218065
TU1390786 lncRNA downstream 209967 14130642 ~ 14130880 (-) True G1218063
TU1390902 lncRNA upstream 25824 14366899 ~ 14367369 (-) True G1218173
TU1390903 lncRNA upstream 26929 14368004 ~ 14368240 (-) True G1218174
TU1391370 lncRNA upstream 462739 14803814 ~ 14804168 (-) True G1218618
TU1391492 lncRNA upstream 571285 14912360 ~ 14912577 (-) True G1218737
TU1391494 lncRNA upstream 572134 14913209 ~ 14913545 (-) True G1218739
XM_021561322.2 mRNA downstream 34071 14298386 ~ 14306776 (-) True LOC110488882
XM_021561319.2 mRNA downstream 43179 14291820 ~ 14297668 (-) True arl9
XR_002468496.2 mRNA downstream 119232 14206617 ~ 14221615 (-) False LOC110488875
XM_021561327.2 mRNA upstream 201598 14542673 ~ 14642681 (-) False LOC110488886
XM_021561332.2 mRNA upstream 560258 14901333 ~ 14905565 (-) True LOC110488888
XR_005035939.1 mRNA upstream 671752 15012827 ~ 15021150 (-) False LOC118938699
XR_005035940.1 mRNA upstream 671752 15012827 ~ 15021150 (-) False LOC118938699
XR_005035941.1 mRNA upstream 671752 15012827 ~ 15021150 (-) False LOC118938699
TU1390045 other downstream 625970 13705263 ~ 13714877 (-) True LOC110488853
TU1390042 other downstream 629179 13683784 ~ 13711668 (-) False LOC110488853
TU1389002 other downstream 1498094 12841496 ~ 12842753 (-) True G1216443
TU1388924 other downstream 1512195 12823646 ~ 12828652 (-) True LOC110488817
TU1388712 other downstream 1772182 12563925 ~ 12568665 (-) True LOC110488811
TU1391105 other upstream 215758 14556833 ~ 14557381 (-) True LOC110488886
TU1391564 other upstream 652745 14993820 ~ 14994379 (-) True G1218808
TU1391998 other upstream 976718 15317793 ~ 15318160 (-) True G1219208
TU1394921 other upstream 3057266 17398341 ~ 17399235 (-) True asb5a
TU1398282 other upstream 5494803 19835878 ~ 19836319 (-) True G1225043

Expression Profile