RNA id: TU1391492


Basic Information

Item Value
RNA id TU1391492
length 218
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G1218737
representative True

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 14912360 ~ 14912577 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAACCTACATACCTCATTGTGCATACTCATCTTAAACTCCTCTTCCTGTTGTCAGATTTCCAACCATCCCATCCCCGCCAAATATGTCCTGTCACTCCTTATGTATGATAGGAAGTACTAGCTACTGTAACATTTCGGTTAATTCTGTTAAACCTCTCAGGAGATATtaaatgtgtctctgtgtgcgaCTTAAGAATTGGCTTCTCTTTCTACTCAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1391370 lncRNA downstream 108192 14803814 ~ 14804168 (-) True G1218618
TU1390903 lncRNA downstream 544120 14368004 ~ 14368240 (-) True G1218174
TU1390902 lncRNA downstream 544991 14366899 ~ 14367369 (-) True G1218173
TU1390885 lncRNA downstream 571285 14340847 ~ 14341075 (-) True G1218156
TU1390878 lncRNA downstream 579388 14332616 ~ 14332972 (-) True G1218149
TU1391494 lncRNA upstream 632 14913209 ~ 14913545 (-) True G1218739
TU1391499 lncRNA upstream 11181 14923758 ~ 14923983 (-) True G1218744
TU1391516 lncRNA upstream 26991 14939568 ~ 14940349 (-) True G1218760
TU1391527 lncRNA upstream 43775 14956352 ~ 14956642 (-) True G1218771
TU1391537 lncRNA upstream 53069 14965646 ~ 14965889 (-) True G1218781
XM_021561332.2 mRNA downstream 6795 14901333 ~ 14905565 (-) True LOC110488888
XM_021561327.2 mRNA downstream 269679 14542673 ~ 14642681 (-) False LOC110488886
XM_021561322.2 mRNA downstream 605584 14298386 ~ 14306776 (-) True LOC110488882
XM_021561319.2 mRNA downstream 614692 14291820 ~ 14297668 (-) True arl9
XM_021561312.2 mRNA downstream 690745 14207018 ~ 14221615 (-) False LOC110488875
XR_005035939.1 mRNA upstream 100250 15012827 ~ 15021150 (-) False LOC118938699
XR_005035940.1 mRNA upstream 100250 15012827 ~ 15021150 (-) False LOC118938699
XR_005035941.1 mRNA upstream 100250 15012827 ~ 15021150 (-) False LOC118938699
XR_002468499.2 mRNA upstream 119769 15032346 ~ 15035966 (-) True LOC110488889
NM_001124536.1 mRNA upstream 143471 15056048 ~ 15061199 (-) True LOC100136280
TU1391105 other downstream 354979 14556833 ~ 14557381 (-) True LOC110488886
TU1390045 other downstream 1197483 13705263 ~ 13714877 (-) True LOC110488853
TU1390042 other downstream 1200692 13683784 ~ 13711668 (-) False LOC110488853
TU1389002 other downstream 2069607 12841496 ~ 12842753 (-) True G1216443
TU1388924 other downstream 2083708 12823646 ~ 12828652 (-) True LOC110488817
TU1391564 other upstream 81243 14993820 ~ 14994379 (-) True G1218808
TU1391998 other upstream 405216 15317793 ~ 15318160 (-) True G1219208
TU1394921 other upstream 2485764 17398341 ~ 17399235 (-) True asb5a
TU1398282 other upstream 4923301 19835878 ~ 19836319 (-) True G1225043
TU1398774 other upstream 5221134 20133711 ~ 20134053 (-) True G1225499

Expression Profile