RNA id: TU1395998


Basic Information

Item Value
RNA id TU1395998
length 1261
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G1222979
representative True

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 18197858 ~ 18199118 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGCTCTTGATTTTATTAAATACGATTAcaacaaataaaataacaaatgatAACACACATATTGTAATGTGTGGGAGTGACTGAGTGCAAATAATGTTATGATTACTTCCTTCCAACGGAATGGCACATTACCACTGTTATCAGCAACTGTAAATTGAGACCTTTGAACAAACATTCTATCATGCCTTTAAGAAAATGCCTCCTgcgtcatcaaatcaaattttatttgtcatatacacatatttagcagatgccaTTGCATCTGTtgttcctaactccaacagtgcagtagtgtctaataattcacaacaatacacacaaatctaaaagtaaaagaatggattTAAGAAATACacaaatattaggacgagcaatgtcggagtagCATCGActagaatacaatagaatacattatatacatatgaaatgagtaaaacggtatgtaaacattattaaagtgactagtgttccattgttaaagtgaccagtgattccatgtctacgTACATagagcagcagcctctaaggtgcagagttgagtaactgggtggtagcaagCTAAtgatggctatttagcagtctgattgccttgagagagaagctgtttttcagtctctcggtcccagctttgatgcacctgtactgtcctcgccttctggatgatagctggcCATCAAAGATGGACGCAAACCCAAGATTGACTGCTCTTGGAACATGACATACTGTATCTTTGTGTTGCAATAGCAAATGCCATGAACAAGTCACCTCTGCTGTCTGCATAGCCTGCCTGTACATTAAATAAACAACATGAATCTGTCAGCAGTTCACTGCTCCTCTCAGAGATGATGTCATAATTATTTCAAAGACAAAATGAAAACAAttcaaacatacagtaccagtcaaaggtttggacacacctactcacttaaaatcagataccacctggtgCTTCTCCCCTGACAAATATATGTCTGACTCAGTAGCAtcagttgccctctttgtgaagaagcaaacacgagtcactgagccactttgtttcatcgaccattacagtagtgagttcttgtgcagcttgttgcttgatctttgcatgcacatacagtaccagtcaaaggtttggacacacctactcattcaagggtttttcgtttttttttttactttgtagaataatagtgaagatatcggaactatgaaataacacatattgaaccatgtagtaacgaaaaaagtgttaaacaaatcaaaatatattttatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1395993 lncRNA downstream 102 18196898 ~ 18197756 (-) True G1222974
TU1395976 lncRNA downstream 18780 18177675 ~ 18179078 (-) True G1222957
TU1395974 lncRNA downstream 19619 18177675 ~ 18178239 (-) False G1222957
TU1395654 lncRNA downstream 146631 18050970 ~ 18051227 (-) True G1222656
TU1395651 lncRNA downstream 149214 18048387 ~ 18048644 (-) True G1222653
TU1396130 lncRNA upstream 184844 18383962 ~ 18384745 (-) False G1223101
TU1396129 lncRNA upstream 185218 18384336 ~ 18384745 (-) True G1223101
TU1396147 lncRNA upstream 197989 18397107 ~ 18400718 (-) False G1223107
TU1396148 lncRNA upstream 197989 18397107 ~ 18400718 (-) True G1223107
TU1396206 lncRNA upstream 248080 18447198 ~ 18447461 (-) True G1223164
XM_021561418.2 mRNA downstream 184117 18004553 ~ 18013741 (-) True gask1b
XR_002468579.2 mRNA downstream 251966 17940927 ~ 17945892 (-) True LOC110489474
XM_021561406.2 mRNA downstream 420261 17704072 ~ 17777597 (-) True LOC110488931
XM_021561404.2 mRNA downstream 563277 17625840 ~ 17634581 (-) True ctso
XM_021561403.2 mRNA downstream 563279 17625840 ~ 17634579 (-) False ctso
XM_021561421.2 mRNA upstream 26150 18225268 ~ 18230133 (-) True LOC110488938
LOC110487745 mRNA upstream 41561 18240679 ~ 18242800 (-) True LOC110487745
XM_036943081.1 mRNA upstream 385262 18584380 ~ 18774361 (-) False LOC110488940
XM_036943080.1 mRNA upstream 385262 18584380 ~ 18774364 (-) False LOC110488940
XM_036943079.1 mRNA upstream 385262 18584380 ~ 18774365 (-) False LOC110488940
TU1394921 other downstream 798623 17398341 ~ 17399235 (-) True asb5a
TU1391998 other downstream 2879698 15317793 ~ 15318160 (-) True G1219208
TU1391564 other downstream 3203479 14993820 ~ 14994379 (-) True G1218808
TU1391105 other downstream 3640477 14556833 ~ 14557381 (-) True LOC110488886
TU1390045 other downstream 4482981 13705263 ~ 13714877 (-) True LOC110488853
TU1398282 other upstream 1636760 19835878 ~ 19836319 (-) True G1225043
TU1398774 other upstream 1934593 20133711 ~ 20134053 (-) True G1225499
TU1398810 other upstream 2122660 20321778 ~ 20325219 (-) True G1225505
TU1398964 other upstream 2266612 20465730 ~ 20470523 (-) True G1225647
TU1399197 other upstream 2523919 20723037 ~ 20723236 (-) True G1225875

Expression Profile