RNA id: TU1398688


Basic Information

Item Value
RNA id TU1398688
length 4562
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id G1225418
representative True

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 20072206 ~ 20076910 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACACTTtacagaaatagaaaataaaaacacaaagcTACGCATTTAAGGAAAAATAAAATAAGTACTCCAAGAGCCAAAGCTTATATTTTATAAATTAGAAACCAAAAGTTCAAATATGTACACAGTATTTCAACCATTTCTGACACTTGTTTAATTcacttatcttttttttttttttcccagtTCAACATCAAAACAGAGACGGGGACTGTACATTTGGCCTGGTGAGTAATATGAGCACACACCTTAGACAGAAGTTCAgctgtaatacattttttttaactgcagTTTGCTTGTGACCTAGTAAGTAACACTGTTGCAATGGCATGTAAGCCTACACACTCTGGAACTCTACTTCGATTACTAGGAGGAGGAGCCTTCTCTATTCTGAAGTCTGAAGGTCTCATTTGAGTCTGTGAGATAATGACAGATCATTCTCAAGTCCCATGGGAAATCTAGTTATCCTTTGGGTGGCCCAGCAGGTGGAAATGTGTGAATGCATTGGGCTTGATCCTGCAGACACCCTCAATCTGTCTGTATTATAGGGCTTAGATGCATCAAGTAAAACTATGGAATGTATTGCATGCTAGCTAGTCGTTTTTCTTTCTCCTTGGCGGGTCATGTTACGTTTGAAAAGGGGATTTACTCTAGCTGTGAGAAAGTGACAGCAACATCGAAGATTAAAAAGCTAGTGGTTTTGACTGACTGGTTATGGGGACTGCCTACAGCTGGAGTGAGACAGTGACCCCTGGCTAAGCTGGCGTTTTCATCAACAGCTTGCTAGCTTCTCGACTCTCTTTTCTTGTCTCCGCCAGTCCTACACATTTAGCCCTCTGCTCATTCCTACTCCGTACACACTCCCAGCTAAATGCACCATTTTGACAAGTGGAAAAGGTGCTGAACACAAAAGTGGTACGTTCTTCTCGGGAACAAACATACCAGTGGGACATGCTAACAAGTGCATAGGAACATTACTCAGGCCTTGTGATGTAATGAAGAAGAGGATTGAGAATTGTTTTTCTTGCGTAAGCTTTGCTGGAAAAGACCATTAAGGAGAATGTTTTTTGCTCGTGGAGCATAATGTATTGGTTCACCATTTCAGTTTGAGCTTGTCCCTATACAATCTGGATGAACCTGATATGgttagggctgtagggctgtagggctgtagggctgtaggagGAGAATGCGTGAAAGCTCTCACGAGTCCATGACGTATTGTTCTGCAGACTACATTTTCTATTTTGTTCACAACCACAAAAGAAACAGCTATATTCCACACTGTATTAAAAAAATACGCTTTGGACAACCAGCTAGACAAGAATCAGACGACAAAAAAATTGTCACAATACACTGGAAAGCCATTTCATATCAAGAAGAGACTTGTTTTCAGGGTTTATTTTTCCAGCAGCATAATGGAATTTCAAAAGTGCAGCCTTGCGTGCCCGTACAGAGACGTCTTGGACCAAAGCCAGAGGATTGATGGAGGTCATTGATATTGGGAGGCTTTGGATCATATGATATTTGTCTTTGGAAGTTTGGATCCATCTGATAACCATAATCAGGGTGGACTAGCAGTAATGTGGGCAGTTTGGGGAGACCAAGACTCAAATTGTACTCTACACATAAATATTGGGTTTGTTCAACTCCCCTGGAGGGGCAGCTTGGCTGGTGCAGATGGTGGGTATACATTCATGAAGAACAGTGTGGATACAGATGTTGCTCGGCTCCTTTAACACTTGCTTCTCAGAAAGGAAAATAGTGATTTATAAACCCCTTATTTTGACCCAATCCAACTCCTGTGGCTTAGAATGCCCATTCCCAGCTCCTACCCCTACTACCTCTCtccaccttctcctaTCCCTactaactctctccacctgctcctATCCCTactaactctctccacctgctcctATCCCTATtaactctctccccctgctcctaTCCCTATGaactctctccccctgctcctaTCCCTactaactctctccacctgctcctATCCCTACTAACTCTCTCACCGAGCTCCTACCCCTATTAACTCTCTCCCCAGCTCCTACCCCTACTAACTCTCTCCCAGCTCCTACCcctactaactctctctctctgtataataCTAGTTGAGACACCCTGAGCAAAAGCAGTCTCATTTCAAAGGAGCATTAATGAAATCTACATCTTTGTCTGAGAGGGTATGAAATAATCATTGTGTGACCAAAAGTATTACTCCACAGTGCCCTAAGATTTAATACATGTTTAATCAAGGCGAGCTTGTATGGGTGAGTTACCACTGTGATTTGAGATGCTCTCTTATTAAGAGCTTCTTGTGATGGGAGGCAGAGTTGCTGGGAAACTGCTTTTCAATTCCAATCTGGGAGAGAAATAGTAATGGGGGGAAGGTAACATATTGGAACTCTAGGTTGAAAACAAGCCGGTTACAAAACTAAGTTCCAATTTCCTCTCCTGGCCACAGTGAAACCATTTTTGTTGAATGATTGGTAACAGTCTAGTAGTGAAAGCCATTCTTACTGTAGTTGAAACCATATTTGGATTAAGAGACCAACCGAAAAAAATGATTTTCAACATCCCTCCCACACCTAATAGCAAACTGGATGCTGATTGGATGGCATTTGCTCTACAGGTCCCAATTGCAGCTGTGTTACATAGTTAGATAGATCTACAAGGGGTTTAGGGTTGTAGAGAGGGGAAGGGTGTGGTTCCAATCTAAACTAATTAGACAATAAGCTCAGCCTGTGAGAGGCCCCAGCCTAGGGGAAGGGCCCATCTGAGAGAGATTAGCCATGGGATTTAATAAACATCATGATCAAAGCCATGACCACCTGTGTGTGGAAGCGTGAACTAAACAGGCAACTGTACCCAACAGGGGGATAAAGAAGCAAAATGACTAAGCAAGGACTGAGTCTGGATACATGGCTATAGTGGAGTTGTACATAGGCAGGGAGGGCAAAGATACAGTATATGGCAATATGCTTGTCATAtagaaatgtttgtgtttcttaaATAAATGCGCAAAATAGAGATTGCTCTGGTACAGGCTTCTATCACAGCACCCTGagaaaaaaatgaatgaaaatagAAAAACATTTGAACAAAACAGTAATATTATTCCAGTACGATGGAAAGGCATAGCACATTCCGTCAATCAAAGATCTCAGTCAAAGGGTCGAAACCAGCCTCGCGCTAAACAGTCAGAGAAGAGAGCACTATTGGTAGGCAGAACATGGTGGTATATTTATTGAGCTGACAGCATGTCTCTGCTTGAAAAAGTGTTTTTGGTCTAATTGAACTGTCCTCCTTGCTACCACTGCCTATAATTGGGATTTGTCTTGTGTATAGAAATGTATAGTAATGCATGTGAGTAACCCAGACTACAAACAAGAGGTCATgtgtttctcctttctctcttccctttcgTTCCTTGCTTCCTGGCAGCGTTGTAGAGTAGGTTATTATTTGGCACTTCATTAAAAGGCGAGGGAGTCTGCTGTTCAaaagcagaccagaccagtcctGCCAGTTAACAGTCGTGTAGAGCAGCTGCTGGGGGCCGGGGATTGGGAATGGGATTGGGAATGGGATTGGGATTTGGGTTCAGAGGACTCTTATCCCAGCTGGGACACGGTGTCTTTAACCTTGGGAAAATTGCTTAACCCCCTTAAAGAGCTTTGGATTAAAGAACCTCCCAGGTGAAATAATTACTGTGATGCTCACAGCAGATTGTTTTTATTATATGTGCTGTTTCGAACGGTGAAATTGAATCCTCACTCTGGTCCAATTTTTGGTTCATTTAACATATTTAGCCAAAATGAACATCAAATAAAAAGGTAATGCTTTTGGCCTTTCTCTAGTTTCTATAAGGAAAACCTCAGATTGACTTTTGCTGCAGATACTGTAGGTGACAATATCTTGGGTGAATTTGCTAACCTGGCTTCAATGGATCTGCCAAACTCGAAACATATAGAGTAGTCAACTTTTGGAACTCTGCCACTGCCTTTCCTCACCATCATCACCTGTTCATTAGTAAAGCCAGAAGTAGTTGCACAGTAATGGAACTAACGACTGTGGTCACCTTGGATCTGAGAGGATGGGAAAACCACACCATGGAGAAGTGACTGAGGCTTTAAGTCTAAGACTGGAACCATGCTCCCCGTCAACCACCACACATCATGCAAAGTGTGCGACACAGAGGAGACCAGCTACTGTATGACAGGGCTCTAGAAAGCAAATGATCAAAACcacttgggggtgggggtggggggcagaGATAGGGAGcaagggagtgagtgagagagatggagaaatagaATCTGATAGCTTGGGCTCAGTACCCCCCCCTTCCCTGCCCCCAATTCTTCTTAGAGTTGAGGGTGATAGACTTGTCCTGATAGTTTTGTGGACAGAAAAGAGTTGCTTGAAGATCCAGCAGGTGCTATAGGACATCACTCTTCAGGCTGGGCAAGCATAGGCCCCTTCGTTGCAAGGCCCCACAAGGCAAAGGAAGAGCATAGAAATCAGAACATGGGGGTGGGCGGTCGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1398714 lncRNA downstream 41121 20030786 ~ 20031085 (-) True G1225444
TU1398710 lncRNA downstream 44332 20027636 ~ 20027874 (-) True G1225440
TU1398706 lncRNA downstream 51429 20020548 ~ 20020777 (-) True G1225436
TU1398699 lncRNA downstream 59729 20012276 ~ 20012477 (-) True G1225429
TU1398371 lncRNA downstream 105289 19966693 ~ 19966917 (-) True G1225129
TU1398744 lncRNA upstream 18505 20095415 ~ 20095624 (-) True G1225474
TU1398765 lncRNA upstream 35465 20112375 ~ 20112644 (-) True G1225491
TU1398769 lncRNA upstream 39196 20116106 ~ 20116827 (-) True LOC118938705
TU1398757 lncRNA upstream 58181 20135091 ~ 20137529 (-) False LOC110488962
TU1398755 lncRNA upstream 58284 20135194 ~ 20137686 (-) False LOC110488962
XM_036943125.1 mRNA downstream 111506 19948368 ~ 19960700 (-) True LOC110488960
XM_021561455.2 mRNA downstream 226297 19789786 ~ 19845909 (-) True LOC110488958
XM_021561454.2 mRNA downstream 300535 19756005 ~ 19771671 (-) True LOC110488957
XM_036943121.1 mRNA downstream 318304 19742080 ~ 19753902 (-) False LOC110488956
XM_036943131.1 mRNA upstream 38615 20115525 ~ 20130254 (-) False LOC118938705
XM_036943127.1 mRNA upstream 58269 20135179 ~ 20163475 (-) False LOC110488962
XM_036943126.1 mRNA upstream 58269 20135179 ~ 20163726 (-) False LOC110488962
XM_036943130.1 mRNA upstream 58269 20135179 ~ 20165060 (-) False LOC110488962
XM_036943128.1 mRNA upstream 58269 20135179 ~ 20165062 (-) False LOC110488962
TU1398282 other downstream 235887 19835878 ~ 19836319 (-) True G1225043
TU1394921 other downstream 2672971 17398341 ~ 17399235 (-) True asb5a
TU1391998 other downstream 4754046 15317793 ~ 15318160 (-) True G1219208
TU1391564 other downstream 5077827 14993820 ~ 14994379 (-) True G1218808
TU1391105 other downstream 5514825 14556833 ~ 14557381 (-) True LOC110488886
TU1398774 other upstream 56801 20133711 ~ 20134053 (-) True G1225499
TU1398810 other upstream 244868 20321778 ~ 20325219 (-) True G1225505
TU1398964 other upstream 388820 20465730 ~ 20470523 (-) True G1225647
TU1399197 other upstream 646127 20723037 ~ 20723236 (-) True G1225875
TU1401215 other upstream 2151409 22228319 ~ 22233291 (-) True LOC110488986

Expression Profile