RNA id: TU1398822


Basic Information

Item Value
RNA id TU1398822
length 2280
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G1225517
representative True

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 20258534 ~ 20260813 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAAAACAGGAAAGCAACTATTTTAATTCTCCGCTCCAACTGAAGTTCAACAAGTTAACATCATCTCAACATTCTTCATCAGATTTAGACAGGCTTGGTTGAGGGGAATACTAGTGCAACAAAAAAAGGCACAAAACCACATCTTGGGGGCAAAATTAACCAGAGGTCTTATGTATTGGTACAGAACAGAATAACAAGCCTGATAATATAACCATCATCCTTGGTCAAACACAATGCATTTCACTGGTTTATTAAAAACTCAGGTTGTTCATTTACCTGCTCTGAAATGCAGAGGTCCGGAAATAAGTTTCCTTTCTGTCCAAGCTTTGGTCATAAAATAATTTGTGCTAGAATATGTAAATTATTATACTTTCTATTATGAGGCCTGGGCAGTGTTCAGAAGGACACACCGTAGCAACTGTTTGCAACAAAAAAAGGTTATTGTTCAGGCAGTACCTCCCCGTTTCACTAAGTTTCAAAACGCCCTACCTACTGAACATGATCCAGGTAGTAAACGCCTTTAGAGGAAAAGGCTATAAGGACACTCCTAACAGCAAACCAACATCACATTTAGTTTAGTCTATTGCAGAGTCCCTATAGCCTCCGTCTTAACAGAGCCATTTGTGATACACGACCGGAGTCTATACCGCTGTCTTCCTTAACCTGAGAGGGGACTTCTTAACATTATATTTTCTCTAAAACATCAAAATCACATGTTTATGCAACTGCTCCAAATGCTGGTTGGTACGCGTCTTTGTAAAGTTAGTCCTAGTACAATAAAGGGACACTAAGAGAAGATTAGTGCAGGTGGTATAATAACATTCAAAATACAGGGAATTCACAAAAATAGGATATTTTCTAATTCTACAAATATTTAACAATGGTTACTTATGAATAGCAATGCCTCAATTTGTATCTATGAACTTTCAACAAATTCTTTGCACAATTTCAAGTCCCTATTTATCCAAAATCAACATAATTAATTCTATACAAGAGAGTAATTAATtagaaacatagaaatataatgcaACACAAAACAGTGAGAACAAACAGCCTCATTCATATGAGCCTCTCTGGGAATAAAGAAACTGATGGACTGTTATTAAGATGACCCATGATACTTCACTCTGTGCAATTTACATCCACACACACCTGGTGCAATACCACTGATTATGTTGACAGGTTTTGATGGTAAATGATTTCAGTCATTgttggtgtaaaaaaaaaatagcaacAGACGGTCAACTTTCAAAATGACTGTTGGGTGGGGTGATACTTCGGGTGGGAGTCTGAACAGGGAATTAATTTGCTGGGGGTAACGTCAAGGAAAGATACATTTTTTCCTTCCATTTTCAATCGGATGCCATAGAAGCTTTGGGGATGGGGAGCCAACGTGTTGTGACGGGCTTGGGTGGGGGAGGATGGGAAGGAATGGGTAGAGGCAGAAGCAGCTGGGATTGGTTggattatacagactggtagccGGTGCGACTCTTCCTCCGGCCAATCAGGTAAGAGATAAGCACAAGGATGATTAGGAAGCAGAGGGCCACGCCCACAGCAATGGGCACCAGAAAGCTCAAATCAGAGTCCATGAAGCACTCCACGGCTGccacagaagagacagaagaaggGTTAGCGACATTAGCATGCTAGCAATTAGTTAGCAGAAAACACATTTTAGTGAAGAGAGAAGAAACAGGATTTGGTTAAGCTCTTCACAGACAACATGGGTGACAAGGCTCGAAAAGCAGCAAGACATCAGATCAGAACCCAGACATTCATCTACAACATGGGGGCGGTTCTGTCAGAGCATATTCGGTGAAGGCAGATCTACAACAACACCGGGGATTCTGTCAGAACATGGGCAGTGACAGCAGTTAGGAAAATATTTGGCCATCATCTGCAATCTATAGTCAACCATGTTATAAGTAAGGAATAAGAGTCAGCCAATCAATTCTAAATATATCTACAAGAACTGTTACATGCCAAATGTTATCAATGGAGCCGAGCAATTTCTTTAACACAAACATCTTCTCCAACTCATTGTTTCATGGGAAAGAGCTTTGCTTCAGGTGAATTGTACATTAAGGTTAACTATGCACAGCACATATCAATTTGTAGTCAACATGTATCCTGATGAGGAAAGATACAACCTCAGCATAGccagtggggtcatttagaagTGCTCATAGCTAGAGCCTTGGTTTCTCTTTCTCCCAATAAAATATGCGATCAATACAATGAGGATCAGCACAGCCAGAGCAACCCCGACGGCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1398817 lncRNA downstream 19447 20237512 ~ 20239087 (-) True G1225512
TU1398880 lncRNA downstream 21748 20236543 ~ 20236786 (-) True G1225571
TU1398875 lncRNA downstream 29010 20229014 ~ 20229524 (-) True G1225567
TU1398873 lncRNA downstream 32205 20225700 ~ 20226329 (-) True G1225565
TU1398871 lncRNA downstream 32916 20225394 ~ 20225618 (-) True G1225564
TU1398884 lncRNA upstream 14184 20274997 ~ 20275272 (-) True G1225575
TU1398885 lncRNA upstream 15216 20276029 ~ 20276271 (-) True G1225576
TU1398819 lncRNA upstream 16720 20277533 ~ 20308964 (-) True G1225514
TU1398891 lncRNA upstream 26026 20286839 ~ 20287609 (-) True G1225582
TU1398894 lncRNA upstream 29009 20289822 ~ 20290999 (-) False G1225584
NM_001160677.1 mRNA downstream 43026 20206253 ~ 20215508 (-) True mcts1
XM_036943128.1 mRNA downstream 93472 20135179 ~ 20165062 (-) False LOC110488962
XM_036943129.1 mRNA downstream 93472 20135179 ~ 20165062 (-) False LOC110488962
XM_036943130.1 mRNA downstream 93474 20135179 ~ 20165060 (-) False LOC110488962
XM_036943126.1 mRNA downstream 94808 20135179 ~ 20163726 (-) False LOC110488962
XM_021561468.2 mRNA upstream 5171 20265984 ~ 20273649 (-) False LOC110488967
XR_005035953.1 mRNA upstream 5171 20265984 ~ 20273649 (-) True LOC110488967
XM_021561474.2 mRNA upstream 43561 20304374 ~ 20308443 (-) True zbtb33
XM_036942651.1 mRNA upstream 54816 20315629 ~ 20316614 (-) False ndufa1
NM_001160667.2 mRNA upstream 54822 20315635 ~ 20316316 (-) False ndufa1
TU1398774 other downstream 124481 20133711 ~ 20134053 (-) True G1225499
TU1398282 other downstream 422215 19835878 ~ 19836319 (-) True G1225043
TU1394921 other downstream 2859299 17398341 ~ 17399235 (-) True asb5a
TU1391998 other downstream 4940374 15317793 ~ 15318160 (-) True G1219208
TU1391564 other downstream 5264155 14993820 ~ 14994379 (-) True G1218808
TU1398810 other upstream 60965 20321778 ~ 20325219 (-) True G1225505
TU1398964 other upstream 204917 20465730 ~ 20470523 (-) True G1225647
TU1399197 other upstream 462224 20723037 ~ 20723236 (-) True G1225875
TU1401215 other upstream 1967506 22228319 ~ 22233291 (-) True LOC110488986
TU1403347 other upstream 3609145 23869958 ~ 23873564 (-) True G1229693

Expression Profile