RNA id: TU1400425


Basic Information

Item Value
RNA id TU1400425
length 897
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id G1227052
representative True

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 21189054 ~ 21202832 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttcttcattatactactttctctctcccctcttcattatactactttctctctctcccctcttcattatactactttctctctcccctcttcattatactactttctctctctcctctcttcattatactactttctctctcccctcttcattatactacttactctctctctcccctcttcattatactactttctctctcccctcttcattatacttctttctctcccctcttcattatactactttctctcttccctcttcattatactactttctctctctcctcttcattatactactttatctctctctcctcttcattatactactttctctctcccctcttcattatactactttctctctctcccctcttcattatactactttctctctctcctcttcattatactactttctctccccctcttcattatactactttatctctctctcctcttcattatactactttctctctcccctcttcattatactactttctctctctcccctcttcattatactactttctctctcccctcttcattatactactttctctctctcccctcttcattatactactttctctctcccctcttcattatactactttctctctctcctctcttcattatactactttctctctctcccctcttcattatactactttctctctcatcttcttcattatactactttctctctcccctcttcattatactactttctctctcccctcttcattataatactttctctcccccctcttcattatactactttctctctcatcttcttcattatactactttctctctcccccctcttcattatactactttctctctcccctcttcattatactactttctctctcccctcttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1400364 lncRNA downstream 81430 21107151 ~ 21107624 (-) True G1226996
TU1399291 lncRNA downstream 394021 20794832 ~ 20795033 (-) True G1225965
TU1399284 lncRNA downstream 398317 20790516 ~ 20790737 (-) True G1225958
TU1399119 lncRNA downstream 543247 20645521 ~ 20645807 (-) True G1225800
TU1399072 lncRNA downstream 560313 20628490 ~ 20628741 (-) True G1225754
TU1400499 lncRNA upstream 101564 21304396 ~ 21304745 (-) True G1227112
TU1400510 lncRNA upstream 113390 21316222 ~ 21316545 (-) True G1227123
TU1400608 lncRNA upstream 252260 21455092 ~ 21456134 (-) True G1227216
TU1400768 lncRNA upstream 533186 21736018 ~ 21736355 (-) True G1227363
TU1400771 lncRNA upstream 541750 21744582 ~ 21744812 (-) True G1227366
trnaa-ugc-63 mRNA downstream 481435 20707545 ~ 20707619 (-) True trnaa-ugc-63
XM_021561493.2 mRNA downstream 624165 20476207 ~ 20564889 (-) True tnmd
XM_021561488.2 mRNA downstream 802993 20380904 ~ 20386061 (-) True LOC110488978
XM_036943135.1 mRNA downstream 857682 20326726 ~ 20331372 (-) False sowahd
XM_021561476.2 mRNA downstream 858974 20326726 ~ 20330080 (-) False sowahd
XM_036943141.1 mRNA upstream 63295 21266127 ~ 21960000 (-) False diaph2
XM_036943142.1 mRNA upstream 63295 21266127 ~ 21960001 (-) False diaph2
XM_036943143.1 mRNA upstream 63295 21266127 ~ 21960001 (-) False diaph2
XM_036943144.1 mRNA upstream 63295 21266127 ~ 21960001 (-) False diaph2
XM_036943138.1 mRNA upstream 63295 21266127 ~ 21960002 (-) False diaph2
TU1399197 other downstream 465818 20723037 ~ 20723236 (-) True G1225875
TU1398964 other downstream 718531 20465730 ~ 20470523 (-) True G1225647
TU1398810 other downstream 863835 20321778 ~ 20325219 (-) True G1225505
TU1398774 other downstream 1055001 20133711 ~ 20134053 (-) True G1225499
TU1398282 other downstream 1352735 19835878 ~ 19836319 (-) True G1225043
TU1401215 other upstream 1025487 22228319 ~ 22233291 (-) True LOC110488986
TU1403347 other upstream 2667126 23869958 ~ 23873564 (-) True G1229693
TU1404303 other upstream 3353901 24556733 ~ 24561862 (-) True LOC110489025
TU1404397 other upstream 3505129 24707961 ~ 24709307 (-) True LOC110489477
TU1406122 other upstream 4900514 26103346 ~ 26162772 (-) False G1232240

Expression Profile