RNA id: TU1403450


Basic Information

Item Value
RNA id TU1403450
length 242
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G1229786
representative True

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 24012153 ~ 24012394 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acccctcctgtctcagcctccagtatttatgctgcagtagtttatgtgtcgggggctagggtcagtttgttatatctggagtacttctcctgtcctaatcggtgtcctgtgtgaatctaagtgtgcattctctaattctctccttctctctttctttctctctctcggaggacctgagtcctaggaccatgccccaggactacctgacatgatgactccttgctgtccccagtccccctggc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1403306 lncRNA downstream 221129 23787904 ~ 23791024 (-) True G1229653
TU1403076 lncRNA downstream 414211 23597045 ~ 23597942 (-) True LOC110487750
TU1403176 lncRNA downstream 417549 23594397 ~ 23594604 (-) True G1229537
TU1403168 lncRNA downstream 429225 23582137 ~ 23582928 (-) True G1229529
TU1403150 lncRNA downstream 441343 23570065 ~ 23570810 (-) True LOC110489005
TU1403476 lncRNA upstream 13202 24025596 ~ 24025873 (-) True G1229812
TU1403511 lncRNA upstream 31745 24044139 ~ 24044475 (-) True G1229846
TU1403527 lncRNA upstream 42735 24055129 ~ 24055512 (-) True G1229862
TU1403529 lncRNA upstream 43403 24055797 ~ 24056500 (-) True G1229864
TU1403531 lncRNA upstream 44533 24056927 ~ 24057988 (-) True G1229866
XM_021561557.2 mRNA downstream 53288 23955890 ~ 23958865 (-) True hs3st1
XM_021561556.2 mRNA downstream 53312 23955890 ~ 23958841 (-) False hs3st1
XM_036943626.1 mRNA downstream 75181 23935691 ~ 23936972 (-) True LOC110487751
XM_021561551.2 mRNA downstream 82595 23893850 ~ 23929558 (-) True LOC110489013
XM_021561552.2 mRNA downstream 104154 23893850 ~ 23907999 (-) False LOC110489013
XM_036943170.1 mRNA upstream 214425 24226819 ~ 24323671 (-) True LOC110487753
XM_021561558.2 mRNA upstream 320794 24333188 ~ 24335273 (-) True nkx3-2
XM_036943172.1 mRNA upstream 331946 24344340 ~ 24368049 (-) False bod1l1
XM_036943174.1 mRNA upstream 331946 24344340 ~ 24368049 (-) False bod1l1
XM_036943175.1 mRNA upstream 331946 24344340 ~ 24368049 (-) False bod1l1
TU1403347 other downstream 138589 23869958 ~ 23873564 (-) True G1229693
TU1401215 other downstream 1778862 22228319 ~ 22233291 (-) True LOC110488986
TU1399197 other downstream 3288917 20723037 ~ 20723236 (-) True G1225875
TU1398964 other downstream 3541630 20465730 ~ 20470523 (-) True G1225647
TU1398810 other downstream 3686934 20321778 ~ 20325219 (-) True G1225505
TU1404303 other upstream 544339 24556733 ~ 24561862 (-) True LOC110489025
TU1404397 other upstream 695567 24707961 ~ 24709307 (-) True LOC110489477
TU1406122 other upstream 2090952 26103346 ~ 26162772 (-) False G1232240
TU1406154 other upstream 2091698 26104092 ~ 26165403 (-) False G1232240
TU1406145 other upstream 2092143 26104537 ~ 26123887 (-) False G1232240

Expression Profile