RNA id: TU1403476


Basic Information

Item Value
RNA id TU1403476
length 278
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G1229812
representative True

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 24025596 ~ 24025873 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGGGTAGAGGACGCAAATGCATTTTCCCCCCCACCAGGGTGgggaggaggatggtgagagaagcaacaaaatccccaagaatcactgtgaaagaattgCAGGCCTTGGTGGCATATTGGGGTCACCCGTTTTCAAAAAGCACCATCAGacgccacctccacaaccacaggctctttggaagggttgccagaagaaagccctttctgaccccaagacacagacgcaagcgcttggagtttgccaagcgtcatttaaattatgactggaagaaggtggtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1403450 lncRNA downstream 13202 24012153 ~ 24012394 (-) True G1229786
TU1403306 lncRNA downstream 234572 23787904 ~ 23791024 (-) True G1229653
TU1403076 lncRNA downstream 427654 23597045 ~ 23597942 (-) True LOC110487750
TU1403176 lncRNA downstream 430992 23594397 ~ 23594604 (-) True G1229537
TU1403168 lncRNA downstream 442668 23582137 ~ 23582928 (-) True G1229529
TU1403511 lncRNA upstream 18266 24044139 ~ 24044475 (-) True G1229846
TU1403527 lncRNA upstream 29256 24055129 ~ 24055512 (-) True G1229862
TU1403529 lncRNA upstream 29924 24055797 ~ 24056500 (-) True G1229864
TU1403531 lncRNA upstream 31054 24056927 ~ 24057988 (-) True G1229866
TU1403569 lncRNA upstream 46747 24072620 ~ 24074112 (-) True G1229904
XM_021561557.2 mRNA downstream 66731 23955890 ~ 23958865 (-) True hs3st1
XM_021561556.2 mRNA downstream 66755 23955890 ~ 23958841 (-) False hs3st1
XM_036943626.1 mRNA downstream 88624 23935691 ~ 23936972 (-) True LOC110487751
XM_021561551.2 mRNA downstream 96038 23893850 ~ 23929558 (-) True LOC110489013
XM_021561552.2 mRNA downstream 117597 23893850 ~ 23907999 (-) False LOC110489013
XM_036943170.1 mRNA upstream 200946 24226819 ~ 24323671 (-) True LOC110487753
XM_021561558.2 mRNA upstream 307315 24333188 ~ 24335273 (-) True nkx3-2
XM_036943172.1 mRNA upstream 318467 24344340 ~ 24368049 (-) False bod1l1
XM_036943174.1 mRNA upstream 318467 24344340 ~ 24368049 (-) False bod1l1
XM_036943175.1 mRNA upstream 318467 24344340 ~ 24368049 (-) False bod1l1
TU1403347 other downstream 152032 23869958 ~ 23873564 (-) True G1229693
TU1401215 other downstream 1792305 22228319 ~ 22233291 (-) True LOC110488986
TU1399197 other downstream 3302360 20723037 ~ 20723236 (-) True G1225875
TU1398964 other downstream 3555073 20465730 ~ 20470523 (-) True G1225647
TU1398810 other downstream 3700377 20321778 ~ 20325219 (-) True G1225505
TU1404303 other upstream 530860 24556733 ~ 24561862 (-) True LOC110489025
TU1404397 other upstream 682088 24707961 ~ 24709307 (-) True LOC110489477
TU1406122 other upstream 2077473 26103346 ~ 26162772 (-) False G1232240
TU1406154 other upstream 2078219 26104092 ~ 26165403 (-) False G1232240
TU1406145 other upstream 2078664 26104537 ~ 26123887 (-) False G1232240

Expression Profile