RNA id: TU1403873


Basic Information

Item Value
RNA id TU1403873
length 355
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G1230196
representative True

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 24369957 ~ 24370311 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgctaattagctatctagcgtgCCCTGAACACCTTTATGTAAGCATAACTGGGGAAGAAGTGTAGTTTCGTCTGATGGTGGAACACATAGCTTGTGGATCTTGTTAGAGTTGCGTCAATttgaatctggtatcaggataaatatgacaatgagtcaccgattgtatactatgtattttttattagctaagcaataagtggtaaatgcaattttcgtatatacgggctctctgtcccacctcacAGGGCAAAACAGAGAACTAACTTGTTcttgacaaagatattataaatatactctgacagaaaaagttcctgcttccgagccggcctgtcagagtagagactgggcgtggtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1403866 lncRNA downstream 19933 24344346 ~ 24350024 (-) True bod1l1
TU1403778 lncRNA downstream 172040 24197680 ~ 24197917 (-) True G1230104
TU1403775 lncRNA downstream 176729 24192874 ~ 24193228 (-) True G1230101
TU1403774 lncRNA downstream 177387 24192358 ~ 24192570 (-) True G1230100
TU1403767 lncRNA downstream 183599 24186116 ~ 24186358 (-) True G1230093
TU1404238 lncRNA upstream 26779 24397090 ~ 24397317 (-) True G1230528
TU1404241 lncRNA upstream 29172 24399483 ~ 24403326 (-) True G1230530
TU1404227 lncRNA upstream 29455 24399766 ~ 24404614 (-) True G1230517
TU1404246 lncRNA upstream 36089 24406400 ~ 24406655 (-) True G1230535
TU1404250 lncRNA upstream 40475 24410786 ~ 24411157 (-) True G1230539
XM_036943171.1 mRNA downstream 1907 24344340 ~ 24368050 (-) False bod1l1
XM_036943173.1 mRNA downstream 1907 24344340 ~ 24368050 (-) False bod1l1
XM_036943176.1 mRNA downstream 1907 24344340 ~ 24368050 (-) False bod1l1
XM_036943172.1 mRNA downstream 1908 24344340 ~ 24368049 (-) False bod1l1
XM_036943174.1 mRNA downstream 1908 24344340 ~ 24368049 (-) False bod1l1
XM_021561563.2 mRNA upstream 92284 24462595 ~ 24465973 (-) True LOC110489019
XM_021561564.2 mRNA upstream 106297 24476608 ~ 24479197 (-) True LOC110489021
XM_021561566.2 mRNA upstream 111364 24481675 ~ 24495562 (-) True mcm7
XM_036943179.1 mRNA upstream 127069 24497380 ~ 24537328 (-) True LOC110487755
XM_021561573.2 mRNA upstream 186775 24557086 ~ 24558257 (-) False LOC110489025
TU1403347 other downstream 496393 23869958 ~ 23873564 (-) True G1229693
TU1401215 other downstream 2136666 22228319 ~ 22233291 (-) True LOC110488986
TU1399197 other downstream 3646721 20723037 ~ 20723236 (-) True G1225875
TU1398964 other downstream 3899434 20465730 ~ 20470523 (-) True G1225647
TU1398810 other downstream 4044738 20321778 ~ 20325219 (-) True G1225505
TU1404303 other upstream 186422 24556733 ~ 24561862 (-) True LOC110489025
TU1404397 other upstream 337650 24707961 ~ 24709307 (-) True LOC110489477
TU1406122 other upstream 1733035 26103346 ~ 26162772 (-) False G1232240
TU1406154 other upstream 1733781 26104092 ~ 26165403 (-) False G1232240
TU1406145 other upstream 1734226 26104537 ~ 26123887 (-) False G1232240

Expression Profile