RNA id: TU1404313


Basic Information

Item Value
RNA id TU1404313
length 603
lncRNA type antisense_over
GC content 0.49
exon number 1
gene id G1230587
representative False

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 24539099 ~ 24539701 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGAGATTTGAGTCAGCGGGGCAGTGTTCGTACTGTAGCCCTTCTCTGCGTACACATGCCGTGTCTCCGAGCAACTCCTACCCGCTGTTACCGGGCCCCAAGTCCATGACAGGGCAGCCAGCGTGCAGAGCAACACCAGGGGGTACTTCTGAACATATAACCGGGAAACCATCTTCCACTGTCACTCACGGTAAATAGGCGAATTAATGGTTGACAAAAGATTGGCGACCAGGCAGCTCAAAAATGACAAAAGAAACGAGAAACTAAGACAAATAATTCCATAGATTTTTCGAGGAATTTATCTCCAGTTCCCAATTTTGTCTGTGAAAAGAAACACAACTTCCAAAGATCAACTAGTCTATATTTTTccagaaggaaaaaaaaatctaTCGACAATTGGTCTGGGTGCCGTGAATAAATGAGCGCCTGGTTTGTCGGATGCTCAGGTCCCACCCGGTGTCTTCTCCATCCCTTGTCTAGCTCTCTGCTTCAGAACAATGAGCCGTGCAGCACGAGGGTGGCCGCAAGGGGTGAGGTGCGGCCATAggggggctgttatagcagagCCACCGCAAGGTCCTAAATTCGCAACCGCCTGACTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1404299 lncRNA downstream 5756 24533121 ~ 24533343 (-) True G1230576
TU1404225 lncRNA downstream 105471 24426681 ~ 24433628 (-) True G1230515
TU1404255 lncRNA downstream 126162 24412184 ~ 24412937 (-) True G1230541
TU1404250 lncRNA downstream 127942 24410786 ~ 24411157 (-) True G1230539
TU1404246 lncRNA downstream 132444 24406400 ~ 24406655 (-) True G1230535
TU1404316 lncRNA upstream 4673 24544374 ~ 24544800 (-) True G1230590
TU1404317 lncRNA upstream 6758 24546459 ~ 24546726 (-) True G1230591
TU1404318 lncRNA upstream 8704 24548405 ~ 24548839 (-) True G1230592
TU1404309 lncRNA upstream 22164 24561865 ~ 24603948 (-) True G1230584
TU1404307 lncRNA upstream 59825 24599526 ~ 24682015 (-) True LOC110489029
XM_036943179.1 mRNA downstream 1771 24497380 ~ 24537328 (-) True LOC110487755
XM_021561566.2 mRNA downstream 43537 24481675 ~ 24495562 (-) True mcm7
XM_021561564.2 mRNA downstream 59902 24476608 ~ 24479197 (-) True LOC110489021
XM_021561563.2 mRNA downstream 73126 24462595 ~ 24465973 (-) True LOC110489019
XM_036943173.1 mRNA downstream 171049 24344340 ~ 24368050 (-) False bod1l1
XM_021561573.2 mRNA upstream 17385 24557086 ~ 24558257 (-) False LOC110489025
XM_021561571.2 mRNA upstream 23688 24563389 ~ 24580059 (-) False LOC110489023
XM_036943180.1 mRNA upstream 23688 24563389 ~ 24580059 (-) False LOC110489023
XM_021561570.2 mRNA upstream 23688 24563389 ~ 24580536 (-) False LOC110489023
XM_021561569.2 mRNA upstream 23688 24563389 ~ 24580537 (-) True LOC110489023
TU1403347 other downstream 665535 23869958 ~ 23873564 (-) True G1229693
TU1401215 other downstream 2305808 22228319 ~ 22233291 (-) True LOC110488986
TU1399197 other downstream 3815863 20723037 ~ 20723236 (-) True G1225875
TU1398964 other downstream 4068576 20465730 ~ 20470523 (-) True G1225647
TU1398810 other downstream 4213880 20321778 ~ 20325219 (-) True G1225505
TU1404303 other upstream 17032 24556733 ~ 24561862 (-) True LOC110489025
TU1404397 other upstream 168260 24707961 ~ 24709307 (-) True LOC110489477
TU1406122 other upstream 1563645 26103346 ~ 26162772 (-) False G1232240
TU1406154 other upstream 1564391 26104092 ~ 26165403 (-) False G1232240
TU1406145 other upstream 1564836 26104537 ~ 26123887 (-) False G1232240

Expression Profile