RNA id: TU1404588


Basic Information

Item Value
RNA id TU1404588
length 2748
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G1230836
representative True

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 24946472 ~ 24999719 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tccattactgagtttagtctgtcACAATGCGTTACTGGAGACTAGTCttttacaatccattactggagtttagtctgttacaatccattactggagttttgtctgttacaatccattacaggagtctagtctgttacaatccattactggagtttagtatgttacaatccattactggagtctagtctattacaatccattactggagtttagtctgttacaatccattactgagtctagtctgttacattccattactgagtttagtctattacaatccattactgtagtctagtctgttctgttacattccattactggagtttagtctgctacaatccattactggagactagactgttacaatacattactggagtctagtctattACAATCCATTGCTGGAGTCTAGTCtgttctgttacaatccattactggagtttagtctgttacaatccattactggagactagtctgttacaatccattactggagtttagtctgttacaatccattactggagtttagtctgttacaatccatttcTGGAGTcttgtctattgcaatccattactgagtttagtctgttacaatccattaatTTAGTCTAGTCTGTTACGATCCgttactgagtttagtctgttacaatccattactgagtttagtctgttacattccattactggagtctagtctgtgacaatccattactggagtttagtctgttacaatccattactgagtttagtctgttacattccattactgagtttagtctgttacgaTCTCTTACTGAGTTTAGTCTTAcattccattactggagtctagtctgtgACATTCCATTAGTGGAGTTTagtatgttacaatccattactggagtttagtcttttacaatccattactgagtttagtctgttacattccattactgagtttagtctgttacaatccattactgtagtttagtctgttacaatccattactggagtctagtctgttctgttacaatccattactggagtttagtctgttacaatccattactggagtctagtctattgcaatccattactggagtctagtctgttacaatcccattactggagtctagtctgttctgttacaatccattactggagtttagtctgttacaatccatgactggagtttagtctgttacaatccattactgtagtttagtctgttacaatccattactggagtctagtctgttctgttacaatccattactggagtttagtctgttacaatccattactggagtctagtctattgcaatccattactggagtctagtctgttacaatccattactgagtttagtctgttacaatccattactgagtctagtctgttacattccattactgagtttagtctgttacaatgcGTTACTGGAGACTAGTCttttacaatccattactggagtttagtctgttacaatccattactggagttttgtctgttacaatccattacaggagtctagtctgttacaatccattactggagtttagtatgttacaatccattactggagtctagtctattacaatccattactggagtttagtctgttacaatccattactgagtctagtctgttacattccattactgagtttagtctattacaatccattactgtagtctagtctgttctgttacattccattactggagtttagtctgctacaatccattactggagactagactgttacaatacattactggagtctagtctattACAATCCATTGCTGGAGTCTAGTCtgttctgttacaatccattactggagtttagtctgttacaatccattactggagactagtctgttacaatccattactggagtttagtctgttacaatccattactggagtttagtctgttacaatccatttcTGGAGTcttgtctattgcaatccattactgagtttagtctgttacaatccattaatTTAGTCTAGTCTGTTACGATCCgttactgagtttagtctgttacaatccattactgagtttagtctgttacattccattactggagtctagtctgtgacaatccattactggagtttagtctgttacaatccattactgagtttagtctgttacattccattactgagtttagtctGTTTTTATCCTCTTTTTTCACTACTTGGTCACATTTTATTTGTGCATTTACTGTTAAATTAGTCATCTCAGATGAGTGAGGGCTTAGCTACAGCCTAAGCATTAGGAACAACTTCTGTGTTACAAAAGTTAAATGATTTGTTATTCATATAGCAAAAATTCATGTTGTACCTTTGAGGAGTAACGCAATCTTCATGCAATTCTATACAGTTTGTTGACAATAGAGATCCTATTCAATTACTAGAGGGGCTTTGCCATTATCCCTTGAAGTTCCAGATTGGGGTAAAAAATGGCACAAAAAAAAGGAATCCAAACCAGACTAATGAGAATGAATGGCAGTAAATGCTTAATCCAGATTTTacttatgcaggaaaataaaaCTAAGAAAtggaatatacagtgcatttggaaaatatgacattttttacattttttccacattttgttacatcacagccttattctaaaatggatcaaatacaaaaaaaatcctATTCGAtgtatacacaataccccataatgaccattttttaaaattaaaaacagaaatacattatttacatacagtttcagtcaaaagtttgaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1404530 lncRNA downstream 27456 24918714 ~ 24919016 (-) True G1230781
TU1404404 lncRNA downstream 188872 24712666 ~ 24757600 (-) True G1230669
TU1404335 lncRNA downstream 231000 24606138 ~ 24715472 (-) True G1230609
TU1404307 lncRNA downstream 264457 24599526 ~ 24682015 (-) True LOC110489029
TU1404627 lncRNA upstream 8747 25008466 ~ 25008740 (-) True G1230874
TU1404823 lncRNA upstream 124632 25124351 ~ 25124578 (-) True G1231066
TU1404874 lncRNA upstream 153039 25152758 ~ 25153069 (-) True G1231106
TU1404923 lncRNA upstream 184093 25183812 ~ 25184027 (-) True G1231151
TU1404952 lncRNA upstream 200767 25200486 ~ 25200706 (-) True G1231180
XM_021559665.2 mRNA downstream 40065 24904552 ~ 24906407 (-) True LOC110487758
XM_021561579.2 mRNA downstream 72806 24871941 ~ 24873666 (-) True LOC110489031
LOC118938708 mRNA downstream 81984 24862944 ~ 24864488 (-) True LOC118938708
XM_021562175.2 mRNA downstream 237201 24706395 ~ 24709271 (-) False LOC110489477
XR_002468511.2 mRNA downstream 265045 24599699 ~ 24681427 (-) False LOC110489029
XM_036943634.1 mRNA upstream 534352 25534071 ~ 25534394 (-) True LOC118938754
XM_021561580.2 mRNA upstream 597652 25597371 ~ 25976803 (-) False LOC110489032
XM_036943184.1 mRNA upstream 597652 25597371 ~ 25979494 (-) False LOC110489032
XM_036943185.1 mRNA upstream 658778 25658497 ~ 25976797 (-) True LOC110489032
XR_005035959.1 mRNA upstream 1570475 26570194 ~ 26586161 (-) True LOC118938709
TU1404397 other downstream 237165 24707961 ~ 24709307 (-) True LOC110489477
TU1404303 other downstream 384610 24556733 ~ 24561862 (-) True LOC110489025
TU1403347 other downstream 1072908 23869958 ~ 23873564 (-) True G1229693
TU1401215 other downstream 2713181 22228319 ~ 22233291 (-) True LOC110488986
TU1399197 other downstream 4223236 20723037 ~ 20723236 (-) True G1225875
TU1406122 other upstream 1103627 26103346 ~ 26162772 (-) False G1232240
TU1406154 other upstream 1104373 26104092 ~ 26165403 (-) False G1232240
TU1406145 other upstream 1104818 26104537 ~ 26123887 (-) False G1232240
TU1406141 other upstream 1123111 26122830 ~ 26157591 (-) False G1232240
TU1406144 other upstream 1123111 26122830 ~ 26165298 (-) False G1232240

Expression Profile