RNA id: XM_021562289.2


Basic Information

Item Value
RNA id XM_021562289.2
length 2304
RNA type mRNA
GC content 0.45
exon number 4
gene id LOC110489563
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 9418351 ~ 9422023 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTCTGCTGTCCCGTGAGGTCCGGTGATGTATGATCTCACAACATTCAACTGGTTATGTAAACAAACTCATTAATCCAGACGTGTGTTTATTATACTAGCCTACTAGTGAGTGGAGGGTCATTGTACGCGGTGCTGTCGACATTCTACTGTACTTGAATATAAAGGATGGGCGTGAGTCGCCCTCGAAAGGGAAGCGAGGGGGGATCCATTTTCAGCATAGAAGGCGAGCTCACTGCTCAGTTCACTCTGCGCGCTGCTTCCTATgcggagtgagagagaggcgcTATGGATACTACAGGAAACACCACAACAGCTGTCTGAAGACCAGCCAAATATCAACTGAAACGCACAGGAGGGAGGGGAGTGTGAGAAacataggttgtgtgtgtgttaaagtgtGCAtgttagagagagcgagagagaggactaAGGTTGGACCAGGTGATCACGTCCTATCAAACCTCCAAGGAGCTGCCGGCCAGGATCAGTGTTTACAGGAAGGATCAGAGTTCCGACCAGAACATGGTGGTGCCAGCCCGCTGCCCGGGACCCTGTGCCATGCTGGCGCTCAGCCTTCTCATGGGATACGGCGTGGTGCGCTGCGTCGCCGGTCAGAACGACACGGAGCCCATCGTACTGGAGGGGAAGTGTCTGGTGGTCTGCGACTCTAACCCGTCCTCGGACGGCGGGGTGACTTCATCGCTCGGGATATCCGTCCGGTCGGCTGGCGCCAAGGTAGCTTTCTCCGCGGTGCGCGGGACGAATCACGAGCCCTCCGACATGAGCAACACGTCCATGACCATCTACTTTGACCAGGCTTTAGTGAACATCGGCAACCATTTCGATCTGAAAGCGAGTGTCTTCCAGGCGCCAAGGAGGGGAATATACAGCTTCGGTTTTCATGTGGTCAAGGTCTACAACAGACAGACCATACAGGTCAACCTGATGCAGAACGACTACCCGATCATATCAGCTTTCGCCGGTGACCAGGACGTCACTCGGGAGGCGGCCAGCAACGGCGTTCTTCTGCAGTTGGAGCGCGAGGACCGGGTGTATCTGAAGCTGGAACGGGGCACGCTCATGGGCGGATGGAAATATTCCACGTTCTCAGGCTTCCTTGTCTTTCCACTATAATTTAATATGTGATCACGGAAATCGCAAACGTGACTCCTCCATGGTTGAGGAAcgattaaaaaaaacaacaaatttGCTCTTTTATTTGAAGTGAACTGTCAGAGGAAGAAGACAGATTCGTGTACACACTACACACTTTACAGTGTCTATTCAATTCAAACATTAACGTTTCCATGGAGTTCGTACATCCAAATCCATCGACTAAAACCCTATCTGGAAGGATAATCGAATCGATCTACCCGTGATGTATAGGCCTACCACTTGTCGATTATTTGGATTTTATCGCTTGGGAGTCAACTAACTTTTGTCAACAGACTGTCAAGTCAGTCTACCTCTGTGTACCCTGACTGCTGAACGGATGAGAATAATATTATATAAATCGAAAAGCTTAAAACTTCCCGAACTAACGTGTATTTACCAATGCTCTCTCTATTTTGTGTTTGTGTAGCCTTAAATAATAATGTTTCCGTCAAGTGAGTTGTATGGAATTCTTATGGACGTCCAGGAGAAGAAGAGTGCTTTCACGCcgaaggctttttttttttttttttttttgcaggaatggaagaatgtgtttgttttttgctGTTTATGGTGTTCCGTTTGGATGCTGAACAAAATGGAagacttttttttgtttgttttgtgctTTTCATGGTGTTCCGTTTGGATGCTGAACATGTTGAAAAGAAGGCAAATATAGGCTGCCTAACTATCCAGAGATGATATAAAAGATTTTTAAAAAAGCGACATATTTCAGCCAATGGACACGTCTATAGAAActcttttacaaaaaaaaaaaaacaaatatttatcTAATTTATAAAGTACATATTCACATTATGGTGTGTTCTACATTTCGGATCTGCGTAGCTTTAACTGATATTGTGTCCAGTGACGTTGCTCACACATGTACATTGTGAAAATAACAACAGAAAAATCCCAATTATATGATGTCCCGCCTAATAAATAATATTGCATTGTATACGCGTATGTATTCACTTTTATTATATAGGCTACCAGTTTAGGCTTGCAAATGACATGCAAGGTCGAAAAGGCATCAGGAAAGTAATCGTGATAGAATCGgtcattaataaagtagtgtacagCAAACGGCCTCAGACCTGTAGCGCACTATTGACTgacgctgtccatggtgctgatcgAGC

Function

GO: NA

KEGG:

id description
K24235 CBLN; cerebellin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1434871 lncRNA downstream 43080 9374124 ~ 9375271 (-) False G1256050
TU1434873 lncRNA downstream 43080 9374124 ~ 9375271 (-) True G1256050
TU1434825 lncRNA downstream 99564 9318525 ~ 9318787 (-) True G1256008
TU1434791 lncRNA downstream 130520 9287549 ~ 9287831 (-) True G1255974
TU1434783 lncRNA downstream 137979 9280140 ~ 9280372 (-) True G1255966
TU1434981 lncRNA upstream 52301 9474324 ~ 9474694 (-) True G1256145
TU1435010 lncRNA upstream 97073 9519096 ~ 9519380 (-) True G1256172
TU1435012 lncRNA upstream 98641 9520664 ~ 9522332 (-) True G1256174
TU1435014 lncRNA upstream 100769 9522792 ~ 9522996 (-) True G1256176
TU1435062 lncRNA upstream 133433 9555456 ~ 9556132 (-) False G1256224
XM_036945570.1 mRNA downstream 454138 8963472 ~ 8964213 (-) True LOC110514162
XM_036945717.1 mRNA downstream 792157 8597494 ~ 8626194 (-) False LOC110489554
XM_036945718.1 mRNA downstream 792157 8597494 ~ 8626194 (-) True LOC110489554
XM_036945720.1 mRNA downstream 806205 8597494 ~ 8612146 (-) False LOC110489554
XM_036945719.1 mRNA downstream 806534 8597494 ~ 8611817 (-) False LOC110489554
XM_021562297.2 mRNA upstream 798474 10220497 ~ 10246539 (-) False LOC110489568
XM_021562299.2 mRNA upstream 798474 10220497 ~ 10246539 (-) False LOC110489568
XM_021562296.2 mRNA upstream 798474 10220497 ~ 10246556 (-) False LOC110489568
XM_021562295.2 mRNA upstream 798474 10220497 ~ 10246560 (-) True LOC110489568
XM_036943685.1 mRNA upstream 834320 10256343 ~ 10296042 (-) False LOC110489570
TU1434531 other downstream 394348 9023584 ~ 9024003 (-) True G1255735
TU1432811 other downstream 2091895 7325712 ~ 7326456 (-) True G1254214
TU1431731 other downstream 2955791 6462202 ~ 6462560 (-) True G1253278
TU1431674 other downstream 3011062 6407071 ~ 6407289 (-) True G1253229
TU1430304 other downstream 4521866 4895622 ~ 4896485 (-) True LOC110490882
TU1434982 other upstream 55790 9477813 ~ 9478818 (-) True G1256146
TU1435537 other upstream 451496 9873519 ~ 9874742 (-) True G1256654
TU1435807 other upstream 865650 10287673 ~ 10295990 (-) True LOC110489570
TU1436701 other upstream 1396420 10818443 ~ 10818911 (-) True G1257642
TU1438430 other upstream 3088849 12510872 ~ 12533388 (-) False LOC110489593

Expression Profile