RNA id: XM_021562295.2


Basic Information

Item Value
RNA id XM_021562295.2
length 2621
RNA type mRNA
GC content 0.52
exon number 15
gene id LOC110489568
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 10220497 ~ 10246560 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTCCTTCCTGGTGTATGTCGTGCGTCACAAGTGACGTAACTTCTGGGTAGGATTTGTACAGTGCTGAACGTGTTCAAAGGTTTATACAATGTTACGAAAGGAATTCCACTGGGATCTGCTACGAGCTCTTCAACTTTCCGATCGTGTAGCAGAATGCCTTGTGAGTTAAAGCCTCGGTTCCTGGTTCTGTACGGGTCTCAGAAAGGCCAGGCCCAGTCCATAGCCGAGGGGATAGCTGACGAGGCCGAGGAGAGGGGACTGTTTGCTGATATCTGCTGCTTGAGTGAAGGACACAAGTTTAACTTGGAGAAGGAGAGTTCTCCTGTGGTGTTCGTTGTGTCGACCACAGGGGATGGGGACCCACCAGATACAGCCCAGAAGTTTGTCAAGAGAATCAAGAAAAAGACCCTGCCCCGTGACCTCTATGCACACCTCTGCTATGCTTTTTTAGCTCTGGGCGATACAAACTATGCAGATTTCTGCAAATGTGGGAAGACTATTGACAGCCGTCTACTGGATCTTGGTGCTAAACATTTCTATGCAACAGGACATGCAGACGACGGTGTAGGgctgGAGTTGGTGTTGGACCCCTGGCTTGAAGGACTGTGGGAGGCGATCAGAGGAGCGTTATCCAAGATGGCCGCCCCTCAGCCTGAGAGAGATGGCCATGTTAGGGACCAGAGAGTATCGTTGAACGAAACGCCTGAATCGTCAGCAACAGACATCAAACTCCACTTCCTGAGTCTCAACGAATCAGAATCCCAGATCACCAAATCCCTCACAACAGCAGCGAGTTCTAAGACTGATTCTTTGGCTGTTTTAGCATCAGAGACCGGGAGCTCAGTTACAGATCTCATAACGGTGTCAGCGACCGACAACACTGGGACTGCTCTTAAACTTGATAGTGTTGTCTCTGAACGCAAGTCAGTGTTGACGACACAGAGTGGACAGACTGAGGCTCCCCCTGCTGTTGTAGAGGCCTCTCTGACACGCTCCTTGCCTCCGCTGTCTGAGTTGGCCCTTAACATCCCAGCTCTGCCTCCACCCTACCTGGATGTCATGCTTCAGGAAGCCACCATAGAAGAAGAGACCAATGCTCCGGTCAGTAAGGAGACTCTTCACGAGGTTCCCATCTCCAGGGCAGTCCAGCTGACCAGAGACGACTCAGTTAAAACAGCCCTTCTGATCGAGATGGACATCTCATCCCACCCTATGGCCTACCAGCCTGGGGACTCGCTTGAAGTGCTCTGCCCTAACAGAGCCTCCGAGGTGGGGGAGCTGCTCCGTAGACTGGGCCTAGAGGATCAGAAGAGCAACCGCATCCAGCTCTCACTACGAAAAGAAACCAAGAAGAAAACTGCTCAGATCCCCTCCTACATCCCAGAGAACAGCACTCTGCGCTACCTGCTCACCTGGTGTCTGGAGATCAGGACTGTCCCTAAGAAGGCGTTCCTCCGTTCCCTGGTGGAGTGTACAGGAGACAGTGGTGAGAAGAGGAGACTACAGGAGCTGTGTAGTAAACAGGGATCAGCCGACTACAACCTCTATGTCAGAGACCACAACCTCGGCCTATTGGACCTGCTCACGGCTTTCCCCGCCTGCCAGCCCCCTCTCAGCCTCCTCATAGAACATTTGCCCAAACTGCAACCAAGACCGTACTCCGCGGCAAGctCCAGTTTAAGACATCCAGGTCGGCTGCACTTTGTTTTCAACGTCATAGAGTTCCCAGCATGCGCTGGGAGACCCGTGGGGAGGCGTGGCCTGTGTACTGGTTGGCTCTCTGACCTAGTTGATCCCATCCTGGTGCACCCTGGGAAGGCTCAGTCCTCCAGCACCCCACCTCTCCCTAAGgtccatgtgtgtgtgcgtcagaaCTGCTCCTTCCGCCTGCCCTCTGACCTCTCCAAACCCTTCATCATGATTGGACCAGGCACCGGGGTTGCACCCTTCATTGGATTCCTACAACAAAGggagaaggagagggaggaaaaccCAGAGGCGGAGTTCAGTGAGACCTGGTTGTTCTTCGGTTGTCGCCATAGAGACCGAGACTTCCTGTTTAGagagGAGCTGCAGGGGTTTGTGGCCAATGGAACCCTCACCCATCTGAAAGTGTCTTTCTCACGGGACACTCCGGAAGGAACAGAAACACAGACCGAGACGAGACCCAGATACGTCCAACACAACCTGCTCAGCCATGCCAAAGACATCGTCAACCTCCTCCTCAAGGAGAATGGATACCTCTATGTCTGCGGTGATGCTAAGAACATGGCTAAAGATGTAAACGACACCCTGATAGAGATGGTATCAGCAGAGCTTCAGCTGGATAAACTGGACGCCATGAAAAGACTGGCCGGACTCAGGGAGGAGAAACGTTATCTTCAGGACATCTGGAgctgaaagtattcacaaccttgACTTTTTCgaagaaaaaaaaattgtgttaCAAGTTGGGATTGAAATGTATGTAATTGtcaggccagcatcccagagtcacctcttcactgttgacgttgagactggtgttttgcaggtactatttaatgaagctgccagttgaggacttgtgaggcgtctgtttctaaaactagacactaatgtacttgtcctcttgctcagt

Function

GO: NA

KEGG:

id description
K00597 MTRR; methionine synthase reductase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1435809 lncRNA downstream 3801 10215646 ~ 10216696 (-) True G1256893
TU1435824 lncRNA downstream 27658 10192013 ~ 10192839 (-) False G1256905
TU1435855 lncRNA upstream 19181 10265741 ~ 10266825 (-) True G1256929
TU1435854 lncRNA upstream 20313 10266873 ~ 10267907 (-) True G1256928
TU1435864 lncRNA upstream 40091 10286651 ~ 10286882 (-) True G1256938
TU1435867 lncRNA upstream 59398 10305958 ~ 10306219 (-) True G1256941
TU1435868 lncRNA upstream 60332 10306892 ~ 10307229 (-) True G1256942
XM_021562289.2 mRNA downstream 798474 9418351 ~ 9422023 (-) True LOC110489563
XM_036945570.1 mRNA downstream 1256284 8963472 ~ 8964213 (-) True LOC110514162
XM_036945717.1 mRNA downstream 1594303 8597494 ~ 8626194 (-) False LOC110489554
XM_036945718.1 mRNA downstream 1594303 8597494 ~ 8626194 (-) True LOC110489554
XM_036945720.1 mRNA downstream 1608351 8597494 ~ 8612146 (-) False LOC110489554
XM_036943685.1 mRNA upstream 9783 10256343 ~ 10296042 (-) False LOC110489570
XM_036943687.1 mRNA upstream 90457 10337017 ~ 10368732 (-) False LOC110490904
XM_036943686.1 mRNA upstream 90457 10337017 ~ 10368733 (-) True LOC110490904
XR_005036039.1 mRNA upstream 189933 10436493 ~ 10437015 (-) False LOC118938784
trnac-gca-10 mRNA upstream 191835 10438395 ~ 10438466 (-) True trnac-gca-10
TU1435537 other downstream 345755 9873519 ~ 9874742 (-) True G1256654
TU1434982 other downstream 741679 9477813 ~ 9478818 (-) True G1256146
TU1434531 other downstream 1196494 9023584 ~ 9024003 (-) True G1255735
TU1432811 other downstream 2894041 7325712 ~ 7326456 (-) True G1254214
TU1431731 other downstream 3757937 6462202 ~ 6462560 (-) True G1253278
TU1435807 other upstream 41113 10287673 ~ 10295990 (-) True LOC110489570
TU1436701 other upstream 571883 10818443 ~ 10818911 (-) True G1257642
TU1438430 other upstream 2264312 12510872 ~ 12533388 (-) False LOC110489593
TU1438431 other upstream 2264923 12511483 ~ 12533388 (-) True LOC110489593
TU1439729 other upstream 3095493 13342053 ~ 13360778 (-) False LOC110489604

Expression Profile