RNA id: XM_036943686.1


Basic Information

Item Value
RNA id XM_036943686.1
length 1572
RNA type mRNA
GC content 0.53
exon number 8
gene id LOC110490904
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 10337017 ~ 10368733 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCAGCCCagaggggagaaagaaagggagtggATCAATAGGCGCTAGTGTGGGTCTCACTTTCACTCCTTCAATCTCTCTGGTGGGCTGAATGCGCGAGCCCTCCGTTCTTCGAACACTATTTTTGTTCTCGAGCGCACGAGGAAGCAGGTCCAAATCCTGATTACAGCATCTTGCTCACTGAAATCCCGAAATATCGGGGGAAACCATGACAACAGCAGAAACCGGAGATTGAGAGCTGAGTCGGTTGACTGCCAGTAGAAAAACTCTGATGTGAGGGAAGAAACATCTTGTTTTACAAGAACAGTTTGATTTCAAATCCCTTGCTTTTTCTCTATCAAGTATGGAATCCTCGATGACGCGCGCAGAGCAGAATATCATGACAGTTCTATGGGGACTGATGGTCATGGCCTCCAGCGGCCATAGCGCACGAATTGTCAGTGGTCAGACGGTGTGTCAGGGAGGGGCGGAGCATCCGTGCTACAAGATGGCCTACTTCCGGGACATGACCAGCCGCGTTGCATTCTGGGAGGCCAGAAAGGCATGTGAGATGGATGGCGGGTCCCTGCTGAGCATAGAGAATGCTGCCGAGCAGAGACACATAGAGCACCTGCTAcaaGAGCTTCGGATCTCCTCAACAGCGGGGACAGAAACAGGGACTGGAGCAGGTACCGGTAACGGAGGAATAGCAGACGGTGATTTCTGGATCGGGCTGAcaaggacagatggagagaacaCACAGGAACAAGATCACTTCGCCTCCTGTCCCGACCTCTACCGCTGGACTGATGGGAGTGTGTCAcagttcagGAAGTGGTATTTTGACGAGCCGTCGTGCGGAGGGGAGGCGTGTGTAGTGATGTACCACCAGCCCACAGCGCTCCACGGGCTGGGCGGAGCCTACATGTACCAGTGGAACGACGACAGGTGCAACATGAAGCACAACTTCATCTGCAAATACGAACCAGAGAGCCATCTGGTGAAGGAGCAGGGGGACAGGCCTGGAGCTCGTGACCCAGatGTGACGGTGGCACAGACAATAGAGGTCAAACAGGCTGGTCCCAGTGAGGAGGATGGCGCCCCACGCGTAGTCATAGCCGGACCAGGTGAGACAAGTGGAGGGATGTTTCTGGTCTATGTGATCATCCCCACCATCCCTCTGCTGCTGCTCATCCTGGTGGCTTCTGGGACTTGCTGTTTCCAGATGTTCAGCAAGAGCAAACCGGGGACCAAAACCAGTGTTACCCAATCAACACTCTGGATATCCAAGACCCCTAAGACGGACAGCATGGAAGTATGAATGGCATGTGACATCACAAACAAGATCCTTGGAATGAACCGAACCAACAGAATGATAAAGCCTCTCCTCTGATACTATCCCCTGTTCCAAATACCTCTAACCATTCACCTCAACCAATGACCAGCTCTCGTCTTCCACATGTCTTTTGTCCAGTTTGTTCAtgtctccaccactcctcccctccacgccatccttctctccaccaccccatcctcctcctctccaccccatcctcctctccaccaccccatcccactctccaccaccccatcc

Function

GO:

id name namespace
GO:0007409 axonogenesis biological_process

KEGG:

id description
K10078 CHODL; chondrolectin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1435880 lncRNA downstream 2931 10333715 ~ 10334086 (-) True G1256952
TU1435879 lncRNA downstream 3413 10333321 ~ 10333604 (-) True G1256951
TU1435868 lncRNA downstream 29788 10306892 ~ 10307229 (-) True G1256942
TU1435867 lncRNA downstream 30798 10305958 ~ 10306219 (-) True G1256941
TU1435864 lncRNA downstream 50135 10286651 ~ 10286882 (-) True G1256938
TU1435901 lncRNA upstream 8198 10376931 ~ 10377209 (-) True G1256969
TU1435976 lncRNA upstream 17922 10386655 ~ 10386975 (-) True G1257041
TU1435977 lncRNA upstream 19051 10387784 ~ 10388134 (-) True G1257042
TU1436009 lncRNA upstream 67716 10436449 ~ 10437044 (-) True LOC118938784
TU1436047 lncRNA upstream 120128 10488861 ~ 10521170 (-) False G1257090
XM_036943685.1 mRNA downstream 40975 10256343 ~ 10296042 (-) False LOC110489570
XM_021562295.2 mRNA downstream 90457 10220497 ~ 10246560 (-) True LOC110489568
XM_021562296.2 mRNA downstream 90461 10220497 ~ 10246556 (-) False LOC110489568
XM_021562297.2 mRNA downstream 90478 10220497 ~ 10246539 (-) False LOC110489568
XR_005036039.1 mRNA upstream 67760 10436493 ~ 10437015 (-) False LOC118938784
trnac-gca-10 mRNA upstream 69662 10438395 ~ 10438466 (-) True trnac-gca-10
XM_021562304.2 mRNA upstream 76833 10445566 ~ 10459083 (-) True LOC110489574
XR_002468752.2 mRNA upstream 225816 10594549 ~ 10600184 (-) True LOC110490822
XM_021562308.2 mRNA upstream 265327 10634060 ~ 10648867 (-) True LOC110489577
TU1435807 other downstream 41027 10287673 ~ 10295990 (-) True LOC110489570
TU1435537 other downstream 462275 9873519 ~ 9874742 (-) True G1256654
TU1434982 other downstream 858199 9477813 ~ 9478818 (-) True G1256146
TU1434531 other downstream 1313014 9023584 ~ 9024003 (-) True G1255735
TU1432811 other downstream 3010561 7325712 ~ 7326456 (-) True G1254214
TU1436701 other upstream 449710 10818443 ~ 10818911 (-) True G1257642
TU1438430 other upstream 2142139 12510872 ~ 12533388 (-) False LOC110489593
TU1438431 other upstream 2142750 12511483 ~ 12533388 (-) True LOC110489593
TU1439729 other upstream 2973320 13342053 ~ 13360778 (-) False LOC110489604
TU1439722 other upstream 2973493 13342226 ~ 13360778 (-) False LOC110489604

Expression Profile