RNA id: XM_021562308.2


Basic Information

Item Value
RNA id XM_021562308.2
length 1944
RNA type mRNA
GC content 0.49
exon number 8
gene id LOC110489577
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 10634060 ~ 10648867 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

actttaaaatggcggAAACATGATGGAAGCCCTTAATGACACTGCCCATGCAAAGACAGCCTTTTGGCTACCAAATGCCTCTATCATTTTCTATGGCTCTTCACtgcagagagagcgaaagagagaggggagtgggtaGGCTTGTTATGAACTAGTAGGCAAACATTTGAGTAATTCTCCGCGCGCTGGGCATTATTGCACAAGTGGTCCCGTGGAGGGGTCCCTAGCCCTACAACGAGTAGAGACAAGCCCGTGAGTTCCAAGAAAGCGACCGTGCGGTGCAGCCGGAGCAGAAGGCAGGTCCAACTATTTAAACAAGTGTTTAGAAATCGgtgattcctctctgatttcgCCCGCAGTTGCGCATTCCAGAGGGGAGCCGTAGCGGATGCACCAAGCCTCAGCACTCCACGCAtaatttatttattcattcatttccTATCACCAGTGACTGCTGCCAACTGAATACGTCTGAGTGGTTGAGGGATAGATAGCTCTTTGTTTTCGTCCCCCGTCGCCCTCTCTACTTGCTCTAGAACTTCTAACCAAGCTGATTAAGGATGGACGGGAACCGAACCATCGACCCAAGCTGCAGTGAAAAACCTCCCGTGGCCATCGACATCCTTCTCCAGTTGGACATCTTTGGTATCATCCTGTACTCAGTGCTGACCTTCATGGCAGCGGTGTCCATGCTGGTCTACATAGAGGAGTGTTGGTACATCTACCGGAAGGTTCCCTCCAACAAGAAGAGCGCCATCATCTGGGTCAATGGGGCAGCGCCGGTGATTGGCACCATGTCCTGTCTGGGGATGTGGATTCCCCGAGCCACCATGTTTACTGACATGACCTCCGCCTGCTACTTTGCGATCGTAGTGTTTAAGTTCCTGGTGTTAATGATCGAGGAGGTGGGGGGTGACGAGGCGTTTCTACGGCGAGCAGGGAGGAACAAATTGAAGATCAGTACTGGTccctgttgctgctgctgcctctgtctACCCCATGTTAACATCACACGacggaGTTTGTTCCTGCTGAAGTTGGGGTCATTTCAGTTCGCCCTGATGAAGGTTGTCTTCACCATTCTGTCAGTCATCCTCTGGACCAATGGCAACTTCGACGTTACAGATACGGCGGTAACAGGAGCGTCCATCTGGATATCCCTGGGAGTGGGGGTCCTGACCATCATAGCACTGTGGCCTGTAGCCATCATGTTCATGCATCTCAGGACCACGCTGCGCAGCCTCAAGATCATTCCCAAATACGCCATGTACCAGCTGGTGCTAGTGCTGAGTCAGCTCCAGTCTGCCATCATCAACATCCTGGCTATGATGGGAACTATCGCCTGCACCCCGCCATactcctctcaggccaggggatACTtgaTGAGTCAACAGTTGTTAATCCTGGAGATGTTCATCATCACCTTGGTAACCCGCCTGTTGTATCGTCGCCAATACGAGCCACTCCCTGACGACGAGCATGATGACGACCACACTAAGATTGGTCTATCAGCCGAGAGAACTCTGGCATAGCGTGAGGAAGAgagaaactgtgtgtgtgcgtgcgtgcgtgcgcatatGTTTAAGGGAGAATTATGTGGGATCAGGATCCGTTGGAGAATACTGATATATTCTCATGTGTGTATATGGACTAAACTGACAGAACACAATGGACGACCTGAGCTTGTTGTGTTCTGTTACACCgaattgtccaataagaaatcAGTTCAGTACTTTCCTTGGTGAGCGAAGGGGTTAAGATGGATCAGAGTTCTTCATCTCTCAGCCAGTGTGTTTGGATGtgatagtgttgttgttgttgtgtaactgtAATATACGAATGATTTCAGAAATGTATTTTTATCACAAGTTATATGTTTTGCGAACTTTGTACTTGTATCATAATGATCCATTTATAATGTATACTCTTTTTCTCACGTTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1436260 lncRNA downstream 11201 10618694 ~ 10622859 (-) True G1257263
TU1436257 lncRNA downstream 11305 10618694 ~ 10622755 (-) False G1257263
TU1436244 lncRNA downstream 26290 10607013 ~ 10607770 (-) True G1257256
TU1436048 lncRNA downstream 112890 10520084 ~ 10521170 (-) True G1257090
TU1436024 lncRNA downstream 131902 10495811 ~ 10502158 (-) False G1257073
TU1436280 lncRNA upstream 4090 10652957 ~ 10653424 (-) True G1257270
TU1436298 lncRNA upstream 29324 10678191 ~ 10678610 (-) True G1257286
TU1436321 lncRNA upstream 75441 10724308 ~ 10735626 (-) False G1257303
TU1436322 lncRNA upstream 75441 10724308 ~ 10735626 (-) False G1257303
TU1436320 lncRNA upstream 76526 10725393 ~ 10735626 (-) True G1257303
XR_002468752.2 mRNA downstream 33876 10594549 ~ 10600184 (-) True LOC110490822
XM_021562304.2 mRNA downstream 174977 10445566 ~ 10459083 (-) True LOC110489574
trnac-gca-10 mRNA downstream 195594 10438395 ~ 10438466 (-) True trnac-gca-10
XR_005036039.1 mRNA downstream 197045 10436493 ~ 10437015 (-) False LOC118938784
XM_036943686.1 mRNA downstream 265327 10337017 ~ 10368733 (-) True LOC110490904
LOC118938941 mRNA upstream 24083 10672950 ~ 10673745 (-) True LOC118938941
LOC118938942 mRNA upstream 24882 10673749 ~ 10674545 (-) True LOC118938942
XM_036943695.1 mRNA upstream 37054 10685921 ~ 10711135 (-) True LOC110490906
XM_021562312.2 mRNA upstream 126829 10775696 ~ 10796587 (-) False LOC110489580
XM_021562314.2 mRNA upstream 126829 10775696 ~ 10796588 (-) False LOC110489580
TU1435807 other downstream 338070 10287673 ~ 10295990 (-) True LOC110489570
TU1435537 other downstream 759318 9873519 ~ 9874742 (-) True G1256654
TU1434982 other downstream 1155242 9477813 ~ 9478818 (-) True G1256146
TU1434531 other downstream 1610057 9023584 ~ 9024003 (-) True G1255735
TU1432811 other downstream 3307604 7325712 ~ 7326456 (-) True G1254214
TU1436701 other upstream 169576 10818443 ~ 10818911 (-) True G1257642
TU1438430 other upstream 1862005 12510872 ~ 12533388 (-) False LOC110489593
TU1438431 other upstream 1862616 12511483 ~ 12533388 (-) True LOC110489593
TU1439729 other upstream 2693186 13342053 ~ 13360778 (-) False LOC110489604
TU1439722 other upstream 2693359 13342226 ~ 13360778 (-) False LOC110489604

Expression Profile