RNA id: XM_021562337.2


Basic Information

Item Value
RNA id XM_021562337.2
length 2541
RNA type mRNA
GC content 0.50
exon number 10
gene id LOC110489602
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 13170348 ~ 13176530 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGCCAATTAGAATGTGGCAAGTCAGTGCATTAACCTGATTTCCGAAGTCTTTAGCTAGAATCCACAAGCCAAAGATCAGTTTGTAACCCCACTTCAGGATTCAAAAAATATCTACAGAGATTTCTATTAATACACCATTTTGGTGACTTTCATCAGCTACCGTTACTAGTTAAAAAGGAGAAGTCTCACTCGTTGCACGGGTAGCATTCCATTGGAAAAGCGGACAATGAGAAAGATAGCGCTGCTACTGATTGTGGGACTTGGCGTTGTCCACTTTGCCACTGTCATCCGATGTGAAGCTGATGATGTAGCGGAAGAAgtcgaggaggaggagggtggtgatgataatgatgaagaGGATAAAGATGACCTAACAGAGGTGAAGGATGAGAACGGAGTGTTGGTCTTGAACGACGACAACTTCGACATGTTCATGGAGGGGAAGGACACCGTGCTGGTTGAGTTCTATGCACCATGGTGTGGCCACTGTAAGCAGTTTGCTTCAGAGTATGAGAAGATTGCCCTGACTCTGAAGGAGAATGACCCCCCTATCCCTGTGGCCAAGGTGGACGCGACCAAGTCCAGCTCCTTAGGGAGCAGGTTCGAGGTGTCTGGATATCCCACCTTCAAGATCATGAAGAAGGGGGAGCCTGTGGAGTATGATGGCGCCAGGAATGAGCAGGACATTGTGGCTCGAGTGATGGAAGTGGCCCAGCCGGACTGGAAGCCACCTCCAGAGGCCACCCTGGTGCTGACCAAGGACAACTTTGACGAGGTGGTCAACAGCGCTGACATCATCCTGGTGGAGTTCTATGCCCCATGGTGTGGCCACTGTAAGCAGCTGGCTCCAGAGTATGAGAAGGCAGCCAAGGCCCTGAGCCAGcgctctcctcccatctccctgGCCAAGGTAGACGCCACCCAGGAGAATGACATCGCCAACCGCTTCGGGGTGTCTGGGTACCCCACCCTCAAGATCTTCAGGAAGGGGAAGGCCTTCGACTACAACGGACCCAGAGAGAAGATTGGTATCGTTGACTATATGAGTGAGCAGGCAGGGCCACCCTCCAAGCAGGTGCAGACGGTGAAACAGGTGCAGGAGTTAATCAAAGATGGTGATGATGCTGTCATAGTGGGCGTGTTCTCCTCAGAGCAGGATATGACCTATGACCTCTACCTAGAGGCCTGTAACATTCTTAGAGAGGACTTCAAGTTCCTCCACACCTTCAGTTCAGACGTGGCCAAGCTCCTCAAGGCCTCCCCAAGCCAGGTCGTCATGGTGCATCCTGAGAAGTTCAGGTCCAAATACGAGAGAGACTCCTATACACTCACCATCAAAGACTCCACAGAGATGTCGGAGGTGCAGGACTTCTTTAAGAAACACATCCTGCCACTGGTGGGTCACAGGAAACAAAGCAATGACGCTAAACGTTACACCAAGAGACCACTGGTTGTCGTTTACTACGGAGTGGACTTCAGCTTTGACTACAGGAAAGCGACCCAGTTCTGGAGGAGCAAGGTTTTGGAGGTGGCCAAGGATTTCCCAGAATACACCTTTGCCATCGCTGACGAGGAGGACTACTCAGACGAGTTGAAGAGCTTGGGGCTCAGTGACAGCGGGGAGGAAGTCAACGTGGGTATCCTGGGAGATGGCGGCAAGAAGTTTGCCATGGAGCCTGATGAGTTTGACTCTGAGGTGCTGAGAGACTTCATCATGGCCTTCAAGAAAGGCAAACTGAAGCCCATCGTCAAATCTCAGCCAGTGCCCAAGAACAACCAAGGCCCTGTGACTGTAGTGGTTGGGAAAACTTTTGACGACATCGTGATGGATACCAAGAAAGACGTTCTGATAGAGTTCTACGCCCCGTGGTGTGGCCACTGTAAGAAGCTGGAACCTGACTACACAGCCCTGGGGAAGAAATACAAGAGTGAGAAGAACCTGGTCATTGCCAAAATGGACGCCACTGCCAACGATGTGCCTCACGACAGCTACAAAACAGAGGGCTTCCCCACCATCTACTTTGCGCCTAGCAACAGCAAGCAGAGCCCAATCAAATTTGAGGGTGGAGACAGAACCATAGAAGGGTTTAGTAAGTTCTTGGAACAGCACGCCACAAAGTTATCACAGAGCAGAGATGAACTTTGAGAATCGCTCTTGAGTACCTAAACTCGCAACTGTGCAGAGTCTGCAGTCCCAGGTGCCCTGGGGGAGCCGAGGGCAGAGGCTGTCAAACTCAAATCAGCCCCTCCTACACCCTAGCCACTTATGCATAGACCTTAGAGGGTTGGATCAGAGAGCAGGATGGAGCTACCACCATATTGTTTAGATGTATTCCTCTGATCTCCTCTAGGGCCTAGTGTTTAGGACCTAGGGGAAGTGCCTGGTGGTTAGGGCCTAGGAGTTAGTGTCCCCAAAGAGGGCTATTAGTGAGTTGCTGTGATCCACAGATTCAACTTTTGTTTTTTTCCATGTCCAAAAGCATGTAAGCACTGTGTTCCAGATTTCTAAGTCTTTCTAAATAAAATGTTGTGAAAACTGA

Function

GO:

id name namespace
GO:0045454 cell redox homeostasis biological_process
GO:0006662 glycerol ether metabolic process biological_process
GO:0006457 protein folding biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005788 endoplasmic reticulum lumen cellular_component
GO:0015035 protein disulfide oxidoreductase activity molecular_function
GO:0003756 protein disulfide isomerase activity molecular_function

KEGG:

id description
K09582 PDIA4, ERP72; protein disulfide-isomerase A4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1439076 lncRNA downstream 13240 13152463 ~ 13157108 (-) False LOC110489601
TU1439078 lncRNA downstream 13272 13152176 ~ 13157076 (-) False LOC110489601
TU1439081 lncRNA downstream 13272 13152317 ~ 13157076 (-) False LOC110489601
TU1439079 lncRNA downstream 13272 13152463 ~ 13157076 (-) True LOC110489601
TU1439128 lncRNA downstream 32074 13138038 ~ 13138274 (-) True G1259687
TU1439151 lncRNA upstream 16031 13192561 ~ 13192782 (-) True G1259709
TU1439170 lncRNA upstream 57163 13233693 ~ 13234203 (-) True G1259721
TU1439728 lncRNA upstream 112198 13288728 ~ 13295385 (-) False LOC110489604
TU1439781 lncRNA upstream 114881 13291411 ~ 13292149 (-) True G1260164
TU1439771 lncRNA upstream 119975 13296505 ~ 13297190 (-) True G1260154
LOC110489601 mRNA downstream 6484 13152374 ~ 13163864 (-) False LOC110489601
LOC118938943 mRNA downstream 386269 12720801 ~ 12784079 (-) True LOC118938943
XR_005036043.1 mRNA downstream 400557 12762412 ~ 12769791 (-) True LOC110489587
XM_021562330.2 mRNA downstream 636905 12507315 ~ 12533443 (-) False LOC110489593
XM_021562331.2 mRNA downstream 636906 12507316 ~ 12533442 (-) False LOC110489593
XR_005036302.1 mRNA upstream 19195 13195725 ~ 13197730 (-) False LOC110490823
XR_002468753.2 mRNA upstream 19195 13195725 ~ 13201088 (-) True LOC110490823
XM_036943722.1 mRNA upstream 26675 13203205 ~ 13213651 (-) True LOC110490912
XM_021562338.2 mRNA upstream 42821 13219351 ~ 13224060 (-) False LOC110489603
XM_021562339.2 mRNA upstream 42821 13219351 ~ 13227413 (-) True LOC110489603
TU1438430 other downstream 636960 12510872 ~ 12533388 (-) False LOC110489593
TU1438431 other downstream 636960 12511483 ~ 12533388 (-) True LOC110489593
TU1436701 other downstream 2351437 10818443 ~ 10818911 (-) True G1257642
TU1435807 other downstream 2874358 10287673 ~ 10295990 (-) True LOC110489570
TU1435537 other downstream 3295606 9873519 ~ 9874742 (-) True G1256654
TU1439729 other upstream 165523 13342053 ~ 13360778 (-) False LOC110489604
TU1439722 other upstream 165696 13342226 ~ 13360778 (-) False LOC110489604
TU1439725 other upstream 165886 13342416 ~ 13360778 (-) False LOC110489604
TU1439823 other upstream 209859 13386389 ~ 13387587 (-) True G1260199
TU1439858 other upstream 286335 13462865 ~ 13505161 (-) True G1260226

Expression Profile