RNA id: XM_036943797.1


Basic Information

Item Value
RNA id XM_036943797.1
length 2583
RNA type mRNA
GC content 0.51
exon number 9
gene id LOC110489642
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 14324774 ~ 14335805 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

actATTGCTCTCTAGTTCCAAACCTCGCGAGAGTAGTCGTGCCTTGACGTCATCATAAAATGGCTACTCAATCAAAGGGATTATAAGAACAACACCTGGTATTTTCAACCAAACAATAACGCTATTATAAAGGGCAGTTTGACCCTGGCGTGAAGCAGTGATGTCACAGCAGGCCCACAGCGAGCACCTGTTGGAGCAGCTGCGTTGGCAGCGGGAAAGCAACGTTCTGTGTGACATCACGGTCGTTGTGGGCGACACACTGTTCCGGGCGCACCGTAATGTCCTGGCGGCATTCAGCGGGTTCTTCTCGGCACTGCCTGACAGAGGTCACCGGGTCACGACCCTTAACCCTGAGTTTGTCAGTGAGCAGGCCCTGGACACCCTGCTGAAATACATCTATACTGGAGAACTACACACTAACAGTGAGGAGTCTGAGGCCGTGCTGAGAGCAGCAGTGTTCCTGGGGATGAGGGAGGCGGAGCGTCTCCTGAAAGACAAAACAGACAGCCAACAGAAGACGAGGATAGAGTCAGCCACACACACCCCCTCCGctccctcaccctcctcccctctcttacccCCCAGCCCAGAAGTAATCGAACCTCTGTCCTGCCTTTCTGGAGTGGGCTCTGTAgagaaggatgaggagagggaaggaatgaggggggaggaggaagagagggaagatcCAGagtacatccctccctccccaagcCCCCCAACATCCCCCCGGAGAGGAGccaggaagaggaagggaagaaagCCCAAGGCCACACCTAGAAACCAGACCTCACCTGAAAACCAAACCTTGCCAAGTAACCAAACATCAGCTAGCCATGACGACATTCCAGATGACGCAAAAGTCACCCAGCCCcagagggggagaggcagggggagaggcagggggagaggaagggggagaggaaggggaagggatcTGTCGTTAGAAGCATCAGACCCTCAGATCGTCGAGGAGAACCAGACAGACCTCAGCCCATCGTCACTGAAACTTGTCAAGAGGAAGAGGgtgagtagtggagagaggagaggaggaaagagagggaggggcagaggaAGAGGGAAACTGAAGGAGAACAGATCAAGCGATGGAGAGGTGAATGAGCGAAATTATGATAAGGGGAAGGCTGGGTTGAAGAACCAACAGGTGAAAGTGAAAGAGAAGCCGGTGTGTGTGGAGTGTAACAATGAGTTCTCTGAGATCAGTAGCCTGAGGAGACACATGAGGATCCATAAAGGAGTGAAACCTTTCCAGTGTCTCTTCTGTTCCAGAGCCTTCACACAGGGAAACCAGCTCAAGATTCACCTCCGCATACACACAgGAGAGAAGCCTTTTGCATGTTCTCAGTGTGACAAGGGTTTTACCCAGAAGTGTCAGTTGGTGGCTCACTGTAGAATGTACCATGGAGAAGAGAAGCCTTACACCTGTGAACAATGTGGGCTGCAGTTCACTACCTCATCTAACTACAAGATCCACAGCAGGAAGCACAGTGGAGAGAAGCCGTATGTGTGTGAACGGTGTGGGAAGGGTTTTGCCCAGGCCAGCACTCTGACCTATCACATTAgggtccacacaggagagaaaccttaccaaTGTGACACCTGTGGGGTGGCCTTCtccgtctcttcttctctcatcacACACAAACGCAAACACACAGGTGAAGCGCCACATGAATGTCTGGTGTGTCAGAGGGCCTTCATTACCAAACGAGAACTCAACAAACACTCTCGCATCCACACCGGTGGAGATCCAGCTGTTAAGCAGCGTGTGACATGTGAGCTGTGTGGAAACACCTACGCTGGCATGAGCAGCCTGAAGAAACACCAAGAGAGACAACACTTAGtgGATGTTCCAGAAGGTGCTCTCCACCACAACATTCCTATTGATCACCAGGGAATGATCTCCCGCGATGCGCCCAGCCCTGTGCCTGAGGAACCAGACAACTCAGACCCCGAGGAACCAGACAACCTTGAGCCTGCGACACCTAACTTGAGCCCTAACCCTCTCTGTGTTCTAGTGGAGCAGCTGCATacatcttccctctccttctcttccccagtctcccccgCCGAAAATATAGAGCAGATCATCATCATTAGAACATTGGACAACGACCTCTgccctgacccctaacccagaccctaacGTTACTCTTTCAGGCCTGGAGTCAGCCCGCCGATTCGATTAGATCACATATGATTCAGCTGTAGTCAGATATAGAACTGTGTGAATAGTGGCGATGTTAATATGTTATGTAATTCTCTCCATCTCCGATCtaaaagtattttatttttctgGTGTGTTTTTAATTGCTGTATATAGTTAAGTGAGATAGTCACTGAGGACCTACCCCACAGAAGAGCCAGGCTCACCGTATGCTGGCTTGCATTTCTCTGATGGTTCTCTGTTCATTGTTCTGGTTTTAAACCCACGTCTCAGTAACATGGGGCTTATGTATAAGCTAGAGGTTATGTTGAGATAGGATGGATATTTATGAAaagtctacattttttttcttcaaataaaCAGCTTTATTCTGAGGAATAAATATCTGAAATCTC

Function

GO: NA

KEGG: NA

JBrowse2

Loading

Neighbor

RNA id RNA type direction distance location representative gene id
TU1440987 lncRNA downstream 17035 14306962 ~ 14307739 (-) True G1261141
TU1441042 lncRNA downstream 21488 14265027 ~ 14303286 (-) True G1261189
TU1440979 lncRNA downstream 70721 14174327 ~ 14254053 (-) False G1261137
TU1441099 lncRNA upstream 27521 14363326 ~ 14364340 (-) True G1261226
TU1441106 lncRNA upstream 28761 14364566 ~ 14364870 (-) True G1261233
TU1441132 lncRNA upstream 35677 14371482 ~ 14372797 (-) True G1261250
TU1441119 lncRNA upstream 124002 14459807 ~ 14462490 (-) False G1261237
TU1441121 lncRNA upstream 163409 14499214 ~ 14500667 (-) True G1261239
XM_036943792.1 mRNA downstream 28374 14274348 ~ 14296400 (-) True LOC110489639
XM_036943794.1 mRNA downstream 28386 14274348 ~ 14296388 (-) False LOC110489639
XM_036943795.1 mRNA downstream 28386 14274348 ~ 14296388 (-) False LOC110489639
XM_036943796.1 mRNA downstream 28387 14274348 ~ 14296387 (-) False LOC110489639
XM_036943793.1 mRNA downstream 29299 14274348 ~ 14295475 (-) False LOC110489639
XM_036943800.1 mRNA upstream 1245 14337050 ~ 14345417 (-) False LOC110489643
XM_036943802.1 mRNA upstream 1245 14337050 ~ 14345417 (-) False LOC110489643
XM_036943801.1 mRNA upstream 1245 14337050 ~ 14345420 (-) True LOC110489643
XM_036943808.1 mRNA upstream 59079 14394884 ~ 14406212 (-) True LOC110490924
XM_036943809.1 mRNA upstream 77029 14412834 ~ 14435607 (-) False LOC110489646
TU1439977 other downstream 608693 13711311 ~ 13716081 (-) True msl2b
TU1439981 other downstream 613939 13708013 ~ 13710835 (-) False msl2b
TU1439980 other downstream 613939 13709596 ~ 13710835 (-) False msl2b
TU1439899 other downstream 786566 13537070 ~ 13538208 (-) True G1260265
TU1439858 other downstream 819613 13462865 ~ 13505161 (-) True G1260226
TU1441075 other upstream 77023 14412828 ~ 14417118 (-) False LOC110489646
TU1441076 other upstream 77023 14412828 ~ 14417118 (-) False LOC110489646
TU1441078 other upstream 77023 14412828 ~ 14417118 (-) False LOC110489646
TU1441079 other upstream 77023 14412828 ~ 14417118 (-) False LOC110489646
TU1441080 other upstream 77023 14412828 ~ 14417118 (-) False LOC110489646

Expression Profile

XM_036943797.1 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 25.
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XM_036943797.1 Expression in each Bioproject

Bar chart with 21 bars.
XM_036943797.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 200.
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