RNA id: TU1440357


Basic Information

Item Value
RNA id TU1440357
length 457
RNA type TUCP
GC content 0.45
exon number 3
gene id LOC110489644
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 14360048 ~ 14362944 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACGGAAAAGGGTCCGGTTTCTATTGTTTACGTTGCCAGAGAACATCTAGCTAGATAGATAGCTAATATTCATTACGGTACCTAGTCAAAAACAGACATTATCATGAAACCAGCGGTGGACGAGATGTTCCCTGAAGGCGCCGGGCCTTATGTGGATCTAGACGAGGCAGGGGGCAGCAGCGGTCTGCTCATGGAACTGGCAGCAAATGAGAAAGCAGTGCACTCAGACTTCTTCAacgactttGAGGATCCGTTTGATGATGAGGACCTGCAGTGAATGAGGAAGACCCTATATACCCAtgattacctgtgtgtgtgtgtgtgtgtgtgtgagagagagagggagagacattaaGATCGTAAGAACTGTAAAACCAGAACCATTTCCATGTTGGAAGTGCTTTTGAAGATCCGCCCTCATTTCCACTGTGTTTGTTAAATAAATCCTTTTCTAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1440313 lncRNA upstream 82289 14274376 ~ 14277808 (+) False G1260590
TU1440314 lncRNA upstream 82289 14274376 ~ 14277808 (+) True G1260590
TU1440215 lncRNA upstream 251651 14107581 ~ 14108446 (+) True G1260497
TU1439691 lncRNA upstream 294362 14065022 ~ 14065735 (+) True G1260117
TU1439414 lncRNA upstream 343676 14014054 ~ 14016421 (+) True G1259884
TU1440361 lncRNA downstream 332 14363272 ~ 14364161 (+) True G1260629
TU1440385 lncRNA downstream 15649 14378589 ~ 14381681 (+) False G1260649
TU1440386 lncRNA downstream 15649 14378589 ~ 14381681 (+) False G1260649
TU1440392 lncRNA downstream 15649 14378589 ~ 14381181 (+) False G1260649
TU1440393 lncRNA downstream 15649 14378589 ~ 14380654 (+) True G1260649
XM_036943803.1 mRNA upstream 3847 14351818 ~ 14356250 (+) True apodb
XM_021562378.2 mRNA upstream 48795 14299427 ~ 14311302 (+) True LOC110489641
NM_001160572.1 mRNA upstream 106043 14251426 ~ 14254054 (+) True sat1
XM_021562367.2 mRNA upstream 142660 14186442 ~ 14217437 (+) False LOC110489635
XM_036943782.1 mRNA upstream 142660 14192952 ~ 14217437 (+) False LOC110489635
XM_036943804.1 mRNA downstream 5222 14368162 ~ 14374980 (+) False LOC110489645
XM_036943806.1 mRNA downstream 5222 14368162 ~ 14374980 (+) False LOC110489645
XM_036943807.1 mRNA downstream 5230 14368170 ~ 14374980 (+) False LOC110489645
XM_036943805.1 mRNA downstream 5231 14368171 ~ 14374980 (+) True LOC110489645
XM_021562393.2 mRNA downstream 190895 14553835 ~ 14563740 (+) True si:ch211-161h7.8
TU1440249 other upstream 144168 14210365 ~ 14215929 (+) True LOC110489635
TU1439645 other upstream 398281 13961501 ~ 13961816 (+) True G1260074
TU1439561 other upstream 489867 13869315 ~ 13870230 (+) True G1260013
TU1439503 other upstream 601895 13746667 ~ 13758202 (+) True LOC110490824
TU1439308 other upstream 879226 13468015 ~ 13480871 (+) False armc3
TU1440507 other downstream 303719 14666659 ~ 14668539 (+) True G1260745
TU1440672 other downstream 542480 14905420 ~ 14914123 (+) True LOC110489673
TU1440741 other downstream 658052 15020992 ~ 15022053 (+) True G1260946
TU1440825 other downstream 830072 15193012 ~ 15194945 (+) False LOC110489660
TU1440827 other downstream 830072 15193012 ~ 15194945 (+) True LOC110489660

Expression Profile