RNA id: TU1441085


Basic Information

Item Value
RNA id TU1441085
length 2120
RNA type TUCP
GC content 0.45
exon number 5
gene id LOC110489646
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 14412828 ~ 14435607 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtctcccctcGTCAGAGGACAGGGCTGTATGGTGTTGTTGGTCCTCTCGGCTCTctagtctcctccccctcttcctctcctccctcctccatctattCCTCCAGGCTCACTGCTGCCCCTCCTCCCAGCGCTTCATTGGATCCCCTTATTGACAGCTCTCAGAGTTCTGAACGCCCCGCCTACCTGGAGAGATATGGAGCTGCCAAAATGGCCACTGTCCGACCCATGATGAAACAGCAACCAGGTGGGGGTGGGGCAAGGCCTAACACctctttcaacaacaacaaccacaggaCTCAACCTTTAACAACAGCTCCCAGCAGGCAACGGGAGAACAGCCTCATTCAGgtgcaggGGGCAGTGCATGGTGTGACAGCAGAGGAGTGTGAAGTGGCTCTGGAGACTCACAGCTGGAACATCCCTCAGGCAATATGCCAACTAAAggTTGAACAGTTGTTTCGCCTGGGTTTGCGTTCTAGATCAGAGTGCCAGGAGGTTCTAGAGCGTTGCCAGTGGAACCTAGAACAGGCAAGCATCCTGCTTCTGGACTCTTATGGGAAAGTAGGCTGAGACAGACTCCAGGACTACTGACCTATAACCCCACAGATCTAAACCTACAGACCAGAAACTGCATACATTAAccctgtacatacatacatttaaCCCTGCAGACAGGAAACTACAGACATTTCCCTGTAATTACATACATTTAACCCTACAGACCTAAACCTACAGACAGGAAACTACAGGCATTTCCTTATAATTACAGACCTCGAACCTACAACCTGGAAACTACAGACATGTCCCTGTAATTACAGACATTTAACCCTACAGACCTAAACCTACAGACAGGAAACTACAGACATTTCCTTATAATTACAGACCTTTAACCACAGACCTAAACCTACAGACCGGAAACTACAGTCATTTCCCTATAATTACAGACCTAAACCTACAGACAGGAAACTACAGACGTTTTCCTATAATTACAGACCATTAACCACCGATCTAAACCTACAGACCAGCCCACCTGTGTACTAGAGAACTGGGCGGGCCATAGAAATATACTCAATAGAACAGACATGGCTGAGTCCTACGAAGGGAAACACTGGACAAGCACACAACTGCATGCTCAGTAGTTACGTTATTATATAGTTATATtatttagttatatatatatatatatttgattaaTATCATTGTTAGTATTATACAGTCGCTCACAGGGTCAAATATGAAGTCTGAATATTTATTGTTTGGATGTCTAGGGATTATTTATGTTGCTGAAATGACTTCAGCTCTcagagttagtgtgtgtgtgtgtgtgtgcgtgtgcgtgtgcgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtaaatacctGCTGTAAATGCTGTTGATTGTACTGGTGGTGATCTGCTGGGATCAGGGATATAAACCACATTCTGCTGTACCTGTAGCACTTTTCATGACTTCAACACTGAGTCCACATGTAGTGTCCTGCACAGATATAACGTGTCATTGGAAAGCATGatgatgttgtattgtagataatGTACTATTGTGATGTTAATATTACATGGAATACAAGTATATATGTGTTGATAAGTCCTGTAAACAGTATAGTGTTTAAtggtgtgtgacagacagaagaGGATAAGAATAATGATAATCATgaagatgctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggtgggtgaacGCACACGCATGctcgtgtgtgtgagtgtgtgcatgtgaaagagtgtgtgtgtgtgtgtgaatagtgaTTATAATTACACGCAATCATACACCATATTACAGACCTATCCACAGGGAGGTACAGATACtgcaagatgtgtgtgtgtgtgtgtgtgtgtgcgtgcgtgcgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgctggctcTAGCTGGTAGTGCTATAAACTGATGGTAGCAATATTGGCTGGAGGACAGAAGATCTGTAATACAACACGTCTGATATTTTGTAATAAACTGATTTTTGGATCAACTCTGGATTAT

Function

GO: NA

KEGG: NA

JBrowse2

Loading

Neighbor

RNA id RNA type direction distance location representative gene id
TU1441132 lncRNA downstream 40031 14371482 ~ 14372797 (-) True G1261250
TU1441106 lncRNA downstream 47958 14364566 ~ 14364870 (-) True G1261233
TU1441099 lncRNA downstream 48488 14363326 ~ 14364340 (-) True G1261226
TU1440987 lncRNA downstream 105089 14306962 ~ 14307739 (-) True G1261141
TU1441042 lncRNA downstream 109542 14265027 ~ 14303286 (-) True G1261189
TU1441119 lncRNA upstream 42689 14459807 ~ 14462490 (-) False G1261237
TU1441121 lncRNA upstream 82096 14499214 ~ 14500667 (-) True G1261239
TU1441125 lncRNA upstream 107363 14524481 ~ 14525528 (-) True G1261243
TU1441177 lncRNA upstream 121984 14539102 ~ 14587634 (-) True G1261294
TU1441203 lncRNA upstream 249540 14666658 ~ 14668541 (-) False qtrt2
XM_036943808.1 mRNA downstream 6616 14394884 ~ 14406212 (-) True LOC110490924
XM_036943801.1 mRNA downstream 67408 14337050 ~ 14345420 (-) True LOC110489643
XM_036943800.1 mRNA downstream 67411 14337050 ~ 14345417 (-) False LOC110489643
XM_036943802.1 mRNA downstream 67411 14337050 ~ 14345417 (-) False LOC110489643
XM_036943797.1 mRNA downstream 77023 14324774 ~ 14335805 (-) False LOC110489642
XM_036943814.1 mRNA upstream 19004 14436122 ~ 14453547 (-) False LOC100653457
XM_036943815.1 mRNA upstream 19004 14436122 ~ 14453569 (-) False LOC100653457
XM_036943812.1 mRNA upstream 19004 14436122 ~ 14453602 (-) False LOC100653457
XM_036943813.1 mRNA upstream 19004 14436122 ~ 14453602 (-) True LOC100653457
XM_036943818.1 mRNA upstream 43135 14460253 ~ 14461905 (-) True LOC118938790
TU1440988 other downstream 77071 14333156 ~ 14335757 (-) True LOC110489642
TU1439977 other downstream 696747 13711311 ~ 13716081 (-) True msl2b
TU1439981 other downstream 701993 13708013 ~ 13710835 (-) False msl2b
TU1439980 other downstream 701993 13709596 ~ 13710835 (-) False msl2b
TU1439899 other downstream 874620 13537070 ~ 13538208 (-) True G1260265
TU1441100 other upstream 7029 14424147 ~ 14435586 (-) True LOC110489646
TU1441118 other upstream 42689 14459807 ~ 14478227 (-) False G1261237
TU1441117 other upstream 59168 14476286 ~ 14478227 (-) True G1261237
TU1441113 other upstream 112751 14529869 ~ 14545476 (-) True LOC110489648
TU1441211 other upstream 251503 14668621 ~ 14681892 (-) False qtrt2