RNA id: XM_036943817.1



Basic Information


Item Value
RNA id XM_036943817.1
length 1036
RNA type mRNA
GC content 0.41
exon number 4
gene id LOC118938789
representative True

Chromosome Information


Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 14476286 ~ 14478272 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GCCCGAGCCCTACTTAAAGAACACAAACTCTCAGTCAGAaaaacactctctctttctctcacacactacAGATAACGAATCTACTAAAACACTCTCCCTACTTTCTGTCTCTGTGGAACCCATCTGAAGATCAGGATGCTTTGCTGTAGAGTGTGTGTCCTGGCTGTGCTGTTATCTATCCTCATCCTCACACTCATCCCCTCCACACAATCAGATTGCTGTCTGAAGTACACTCGGCGTCCAGTGCCATGCAGACGGCTGAAAGACTACACTTACCAGACCATTACCTCTTCCTGTGACATCCATGCTGTCGTCTTCCACACCCGGAGGGACAAGTTTGTGTGTGCCGACCCCTCTCAAGACTGGACCAAGAAGGTACAACGCTGTCTGCTCAAGCGTCAGGAGAGGAAATCTAAACTGAAGAAAATTCTCTGATCTCAAGACCTCATGACCTGGAGatgatttatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttatttaccCTATTTATGCTTTACAAACAGCTAAATATCTCAATATGCATAGAGTCACTGTTTCAGGATGGTTCGTTTTTTAACCTGAGATTTCTGTATTCATACAAATCATTTAATATCTGTGGTTATTATTGTTCATCATATCTGTATTGATTCTGAAGGTGTTTGAGTTTCATATCAGTTTGTGTGTAACTCTATGTATCAATGTTGTAGGTCTGTTTCATAAACAGCAAGTGCAGTATTCCTGATAAACATGAAAACATCTGTTTTCACAGAGTACCACAAAATATTTTTGTGTTGTTTCATATCCTCTGTCCAATTGGAGCCAGAGAAAACCTTTTTAATTTTGGCTTTTCAAAGTGTCCAAATGTATGTTTGAGTTTTCCTGAGGTGTACTGGGTTGTTTAAGCTAAGAGCtatgaaatagataataaaatatgtacttgaaaaaaaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1441119 lncRNA downstream 13796 14459807 ~ 14462490 (-) False G1261237
TU1441132 lncRNA downstream 103489 14371482 ~ 14372797 (-) True G1261250
TU1441106 lncRNA downstream 111416 14364566 ~ 14364870 (-) True G1261233
TU1441099 lncRNA downstream 111946 14363326 ~ 14364340 (-) True G1261226
TU1440987 lncRNA downstream 168547 14306962 ~ 14307739 (-) True G1261141
TU1441121 lncRNA upstream 20942 14499214 ~ 14500667 (-) True G1261239
TU1441125 lncRNA upstream 46209 14524481 ~ 14525528 (-) True G1261243
TU1441177 lncRNA upstream 60830 14539102 ~ 14587634 (-) True G1261294
TU1441203 lncRNA upstream 188386 14666658 ~ 14668541 (-) False qtrt2
TU1441205 lncRNA upstream 188386 14666658 ~ 14667774 (-) False qtrt2
XM_036943818.1 mRNA downstream 14381 14460253 ~ 14461905 (-) True LOC118938790
XM_036943812.1 mRNA downstream 22684 14436122 ~ 14453602 (-) False LOC100653457
XM_036943813.1 mRNA downstream 22684 14436122 ~ 14453602 (-) True LOC100653457
XM_036943815.1 mRNA downstream 22717 14436122 ~ 14453569 (-) False LOC100653457
XM_036943814.1 mRNA downstream 22739 14436122 ~ 14453547 (-) False LOC100653457
XM_036943837.1 mRNA upstream 30155 14508427 ~ 14545696 (-) False LOC110489648
XM_036943839.1 mRNA upstream 30155 14508427 ~ 14545696 (-) False LOC110489648
XM_036943838.1 mRNA upstream 30155 14508427 ~ 14545697 (-) False LOC110489648
XM_021562399.2 mRNA upstream 190277 14668549 ~ 14691715 (-) False qtrt2
XM_021562396.2 mRNA upstream 190277 14668549 ~ 14691717 (-) False qtrt2
TU1441100 other downstream 40700 14424147 ~ 14435586 (-) True LOC110489646
TU1441085 other downstream 59168 14412828 ~ 14417118 (-) False LOC110489646
TU1441113 other upstream 51597 14529869 ~ 14545476 (-) True LOC110489648
TU1441211 other upstream 190349 14668621 ~ 14681892 (-) False qtrt2
TU1441213 other upstream 190349 14668621 ~ 14681892 (-) True qtrt2
TU1441492 other upstream 599438 15077710 ~ 15079352 (-) False G1261562
TU1441495 other upstream 599438 15077710 ~ 15079130 (-) False G1261562

Expression Profile


XM_036943817.1 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 15.
End of interactive chart.

XM_036943817.1 Expression in each Bioproject

Bar chart with 10 bars.
XM_036943817.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 14.
End of interactive chart.