RNA id: TU1441211


Basic Information

Item Value
RNA id TU1441211
length 660
RNA type TUCP
GC content 0.58
exon number 4
gene id qtrt2
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 14666658 ~ 14692839 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggaggagatgtgctggaggagagggtgcgGTCGGCCAGGGAGACGGCCAAGCGGCCAGTAGGAGGATTCTGTCTGGACGGGCTCCATACTGCAGCCATGGAGACACACCTCCGGACCCAGCTCATCACCGCCGTCATCAAGGAGCTGCCTGAGGACaaacccaggCTGCTGCAGGGTGTGGGGCGGCCAGACGAGGTGCTGGCGTGCGTGGAGGCGGGAGTGGACCTGTTTGAGAGCTTCTTCCCCTTCCAGGTGACCGAGCGAGGCTGTGCTCTCACCTTCCCTTTCAACATCACCACTGACCCAGAGGCAGCAGTTGTGGAGTTGGACAAGTCCGAAGCTGCTGTAGGTCAGAAGAATGGAACCGATAATCCCCAAGAAGACCAAACCAAGATGACTCCTTTTGAGATTAACCTGAAAGATAATAGGTACAGAGAGGACTTCAGTCCCCTGGTGGAGGGGTGTGGCTGCTACTGCTGCAGGAACCACCAGAGGGCGTACCTACACCACCTTCTGGTGACCAATGAGCTGCTGGCTGGAGTACTGCTCATGCTCCACAACACGGCCCACTACTACGCCTTCTTCACTGCCCTCAGGGGGGCGCTAGCCAGCGACAAGCTGGACCACCTCAAGAAAAGAGTACTAGAAGGACCAGGCAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1441203 lncRNA downstream 80 14666658 ~ 14668541 (-) False qtrt2
TU1441212 lncRNA downstream 80 14666658 ~ 14668541 (-) False qtrt2
TU1441214 lncRNA downstream 80 14666658 ~ 14668541 (-) False qtrt2
TU1441216 lncRNA downstream 80 14666658 ~ 14668541 (-) False qtrt2
TU1441218 lncRNA downstream 80 14666658 ~ 14668541 (-) False qtrt2
TU1441295 lncRNA upstream 20378 14702270 ~ 14702799 (-) True G1261384
TU1441304 lncRNA upstream 29294 14711186 ~ 14711462 (-) True G1261390
TU1441300 lncRNA upstream 50533 14732425 ~ 14736709 (-) True LOC110489680
TU1441276 lncRNA upstream 115007 14796899 ~ 14797592 (-) True G1261365
TU1441271 lncRNA upstream 147858 14829750 ~ 14858309 (-) True LOC110489675
XM_036943838.1 mRNA downstream 122924 14508427 ~ 14545697 (-) False LOC110489648
XM_036943837.1 mRNA downstream 122925 14508427 ~ 14545696 (-) False LOC110489648
XM_036943839.1 mRNA downstream 122925 14508427 ~ 14545696 (-) False LOC110489648
XM_036943817.1 mRNA downstream 190349 14476286 ~ 14478272 (-) True LOC118938789
XM_036943816.1 mRNA downstream 190357 14476286 ~ 14478264 (-) False LOC118938789
XM_021562447.2 mRNA upstream 49289 14731181 ~ 14741081 (-) False LOC110489680
XM_021562448.2 mRNA upstream 49289 14731181 ~ 14741081 (-) False LOC110489680
XM_021562442.2 mRNA upstream 49289 14731181 ~ 14741082 (-) False LOC110489680
XM_021562445.2 mRNA upstream 49289 14731181 ~ 14741082 (-) False LOC110489680
XM_021562446.2 mRNA upstream 49289 14731181 ~ 14741129 (-) False LOC110489680
TU1441113 other downstream 123145 14529869 ~ 14545476 (-) True LOC110489648
TU1441118 other downstream 190394 14459807 ~ 14478227 (-) False G1261237
TU1441117 other downstream 190394 14476286 ~ 14478227 (-) True G1261237
TU1441100 other downstream 233035 14424147 ~ 14435586 (-) True LOC110489646
TU1441087 other downstream 251503 14412828 ~ 14417118 (-) False LOC110489646
TU1441492 other upstream 395818 15077710 ~ 15079352 (-) False G1261562
TU1441495 other upstream 395818 15077710 ~ 15079130 (-) False G1261562
TU1441452 other upstream 416148 15098040 ~ 15098716 (-) True G1261529
TU1441538 other upstream 507654 15189546 ~ 15189816 (-) True G1261602
TU1441760 other upstream 823806 15505698 ~ 15506198 (-) True G1261796

Expression Profile

TU1441211 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 40.
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TU1441211 Expression in each Bioproject

Bar chart with 19 bars.
TU1441211 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
End of interactive chart.