RNA id: XM_036943835.1


Basic Information

Item Value
RNA id XM_036943835.1
length 2373
RNA type mRNA
GC content 0.57
exon number 18
gene id LOC110489660
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 15166247 ~ 15194945 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGAACAGTGGACTCCCAGCTTCAGCTGCTCCACTCGGGGGTGTCGGAATACCCTGCGTCAAGGTGAAGTTCTGCCGATACTACGCAAAGGATAAGACTTGCTTTTATGGGGACGAGTGTCAGTTTTTGCATGAGGAGCCGTCTATGGCAAGCATGTCCCTTCACAGTGGAGCAAGTCCTGTCCCTTTATCCATGTCTGGAGGAGCCGTGACGTATCCGCTTAGTGCACCCCCGGCCTGCCCGGTTGGGGTACCGAACGTCCCCAAAAAGGGCGACTCTCTGGGGCCTGCAGGCACGGTTCTGGAGGGACAGATGTTAACCATCCCTGGGATGGAGGGCGGGACCCTGAGCGATGCCAATCTGACCAACTCCTACTTCAGCAGCAGCTTCATTGGGGTCAACGGCTTCGGGAGCCCGGCAGAGTCTAAATACTCTATCATGCAGAGAATCACCAACAGCAGCAGTTCTCCCAGTCTCCTTGACGACGGTGCCAAGAACTTCAGCCACAGCGCTCACGATCCAGGGAATTCCCCCATGTCTTCACTCTTCAGTGACTTTGGTGCTCTGAGCATATCACAAAGGAGAAAGggtCCTAACCCTACAGCCAATGAGTTCATCCCTAAGGGGGTTCCCCGCATGGCCACTATGGTCCAGTCCAGTGGTCCGGCCTTCCCATCGCCCCTCTTCCCCCACCTCGGCCTCAGCAGCTCCACCGCCCTCGCACCTGGGATGTCTCTCTCTGCGGGGTCcacccccctccactcccctaaaATCACCCCCCAAACCTCACCTGCCCCTCGCCGGCGTAGCCACACCCCCAACCCCAATAACCCCAACCCAGCCAACTACATGGTGTCCACCAGTGTGTCTGACCAGGGGGCTCACATCATCCAGAAGGAGACGGTGGGGGGGACCACCTATTTCTACACGGATAACACCCCCGCTCCCATGGCCGGGATGGTGTTTCCTACCTACCACATCTACCCCCCCACTGCTCCCCACGTGGCCTACATGCAGCCCAAAGCCAACGCCCCGTCCTTCTTCATGGCTGATGAGCTCCGACAGGAGCTGATTAACAGACATCTGATTACCATGGCTCAGCTTGACCAGTCAGAGAACACAGGTGTTCCATCTGAGGTGGATAGCTACCACAGCCTGTTTCCCCTGGAGCCTGTCCCCCCTCCCAACCGCCTGCAGAAGACCAGCAACTTCAGCTATATCACTTCCTGCTACAAGGCTGTCAACAGCAAGGACGACCTACCGTACTGCCTGAGGAGGATACACGGTTTCAGGCTGGTGAACACCAAGTGTATGATGCTGGTGGACATGTGGAAGAAGATCCAGCACTCCAACGCTGTTACCCTGAGGGAGGTCTTCACCACCAAGGCCTTTGGAGATCACTCGTTGGTGTTCTCCTATGACTTCCATGCGGGGGCAGAGACCATGTTCAGCCGGCACTTCAACGACCCCGCGGCCGACTCCTACTTCACCAAGAGGAAGTGGGGACAGCACGAGCCCACTCCACCGCGGCAGCACGCAGGTCTGCTCCCAGAGTCTCTGATCTGGGCCTACATCGTCCAGCTGAGCTCAGCCCTCAGAACTATCCACACTGCTGGTCTGGCCTGTAGGGTCATGGACCCCAGCAAGATCCTCATCACCGGCAAGACCAGGTTACGAGTGAACTGTGTAGGGGTGTTTGATGTCTTAACGTTTGACAACAGTCAGACCAACCATGTGACCCTCATGCCACAGTACCAGCAAGCGGACCTGATATCCCTGGGCAAGGTGGTGTTGGCCCTGGCATGTAACTCTCTGGCTGGCATTCAGAGAGAGAACCTGCAGAAGGCCATGGAGTTGGTGTCTATCAACTACTCATCAGACCTCAAGAACCTCATCCTGTATCTGTTGACAGAGCAGTCTAGGCTGCGCAGCGTTAATGACATCATGCCCATGATTGGAGCTCGCTTCTACACACAGCTGGATGCATCACAGATGAGGAATGATGTCATCGAGGAGGACCTGGCGAAGGAGGTCCAGAATGGTCGTCTCTTCCGTCTGTTGGCCAAACTGGGCACCATCAACGAGAGACCAGAGTTTCAGAAGGACCATACGTGGTCTGAGACGGGGGACCGGTACCTGCTGAAGCTGTTCAGAGACCACCTCTTCCACCAGGTGACAGAGGCTGGAACCCCCTGGATAGACCTCAGCCACATTGTTTCCTGCCTCAACAAACTGGACGCGGGTGTGCCTGAGAAGATCAGCTTAGTGTCTCGGGATGAGAAGAGTGTTCTGGTGGTGACCTACTCGGACCTGAAGCGCTGTTTCGACAATACCTTTCAGGAGCTGCAGCAGGCCGCTGTCGGACCGCTGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1440820 lncRNA upstream 4842 15161559 ~ 15161883 (+) True G1261012
TU1440814 lncRNA upstream 11493 15154810 ~ 15155232 (+) True G1261007
TU1440805 lncRNA upstream 23501 15142902 ~ 15143224 (+) True LOC110489664
TU1440803 lncRNA upstream 24828 15141352 ~ 15141897 (+) True G1260998
TU1440802 lncRNA upstream 26927 15137362 ~ 15139798 (+) True LOC110489665
TU1440879 lncRNA downstream 80912 15272399 ~ 15272715 (+) True G1261056
TU1440880 lncRNA downstream 83714 15275201 ~ 15275412 (+) True G1261057
TU1440884 lncRNA downstream 90572 15282059 ~ 15282266 (+) True G1261061
TU1440932 lncRNA downstream 143204 15334691 ~ 15343197 (+) True G1261100
TU1440936 lncRNA downstream 145967 15337454 ~ 15340105 (+) True G1261102
XM_021562418.2 mRNA upstream 18891 15142985 ~ 15147834 (+) False LOC110489664
XR_002468610.2 mRNA upstream 25948 15137323 ~ 15140777 (+) False LOC110489665
XM_021562420.2 mRNA upstream 57876 15106017 ~ 15108849 (+) True gtf3ab
XM_036943669.1 mRNA upstream 68031 15096321 ~ 15098694 (+) True rl21
NM_001160637.2 mRNA upstream 68033 15096265 ~ 15098692 (+) False rl21
XM_036943853.1 mRNA downstream 153993 15345480 ~ 15365760 (+) True LOC110489655
XM_021562450.2 mRNA downstream 340983 15532470 ~ 15534780 (+) True LOC110489682
XM_036943863.1 mRNA downstream 505409 15696896 ~ 15704922 (+) False LOC110489686
XM_021562453.2 mRNA downstream 505409 15696896 ~ 15706550 (+) False LOC110489686
XR_002468612.2 mRNA downstream 505409 15696896 ~ 15706550 (+) False LOC110489686
TU1440741 other upstream 144672 15020992 ~ 15022053 (+) True G1260946
TU1440672 other upstream 252602 14905420 ~ 14914123 (+) True LOC110489673
TU1440507 other upstream 498186 14666659 ~ 14668539 (+) True G1260745
TU1440357 other upstream 803785 14360097 ~ 14362940 (+) True LOC110489644
TU1440249 other upstream 950796 14210365 ~ 14215929 (+) True LOC110489635
TU1440825 other downstream 1525 15193012 ~ 15194945 (+) False LOC110489660
TU1440827 other downstream 1525 15193012 ~ 15194945 (+) True LOC110489660
TU1441924 other downstream 505438 15696925 ~ 15706539 (+) False LOC110489686
TU1441927 other downstream 505438 15696925 ~ 15704274 (+) False LOC110489686
TU1441984 other downstream 544443 15735930 ~ 15736417 (+) True G1261980

Expression Profile