RNA id: XR_005036052.1


Basic Information

Item Value
RNA id XR_005036052.1
length 2089
RNA type mRNA
GC content 0.44
exon number 8
gene id LOC110489686
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 15696896 ~ 15706601 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGCCTACTCACTTTGCCAGGACTAAGGAGATTTAAAAGTGAACATTTTAGGGTTGTTTGAGGTGAACTGAAAGCTGTTATTGGACGTTGTCGTAAGGGCATGAGACTTTGGCTTTTCAGGCAAGGCGTATGGGTCCTCAAGGAGTATTGTGAGAAGAATAGCCACCAATCTTCCACTTAAACCATGCCCCAGGGTCCATTTTCAGCTCAATCTTTACACTGAAGACTGTAGTGTCCTGAACAGTGCTGGGAGACGGAATGGACTGGTTGCCTCTTTGGCTGATGTTGTCTGGATCGACAGGGAAGATGAAAATGACTGGTTTGGATTTGGAAGACTGAGGTCAGAAGCACCGTCCCTGCTCATGTTCCGTTCTCACCCGCCTCAGCCCAAACAACAACCTTTGCCCAGACGTAGATCATTACCCAGCCTGCACCAGGGTCAAACCCGCAGCAACGATGAGGCCATCCAGAAGATCAGTGCTCTAGAGATGGAGCTAGCCAAACTCGGAGCCCAGATCGCACAGGTGGTCCTCCTGCCCCAGgtgcccctccacctcctccactcaTGGGATTCCAGCGGAGCTTCTCGGTCGTTGACCTCATCCAGGAGCACCGTTGGAATAAGACAGATGGCCAGACACTGCTGGACCAGGAGCCCAAGCAGGCAGAGGTCCCCAACATGCTGGATGTGCTTAAAGACATCGGCAAAGTCAAGCTACGCCCCGCTAAGAGTCGGCTAGAGAGCCAACAGATGCTGCGTCTCTCATCGCTAATGCCTTGAAGCGCAAGTTCGCCCATCGCTATCGCCACGACAATGAGAACAAGGAGTTTGACTTCCCAGCCTCTGAATTCCCCAAGACTGACAAAGTAGAGGTTCCCCTGAGTCAGCACTGGCTGAAAACCCCAGCCCCTGTAGTGAAACTACACCGAGACACCCATGTTTGGGCAGCACATGTTGAAATCTACTGGCCAGAGAAAGCTCCTCTGAGCACCCAGAGATGGTTTGACCTCCAGACACCCATGGACACTTAAGTGCCTTATCAACCTGTTTGTCACCCGTCTCTGGATGGCCACGTTGTTTGACTAGATATACAATCAATCTGCTCTCTGTTCCTACTCACCAACAGTATTGCCTCAGTCTTCAGTTCTTGTACTTTGATAACATACCATATGTAATTATTTGTTTTACTTTCATTTAAAATATCCTTTTTGTTAAACTGATGCCAGTTTCAAAGTCTTCGATCTTAAATTAGGACGGTCCAAGATTGGTTGTTAGATTTTGTTTTAATGTAGATTTTTGTACCACAACTAAATTCCAATGAGATTCACCCTTGTGTGTTCTGGATATAGTCGAACACTACAAAATCCTAACATTCCTCAACTGTTAACTACATGTATTAAAGGGGATTGAACGGTTTATAAATGCACATCCATTTTGCATGCCCTTTAAGgcagttgtatttatttttgcctCACTGGGTCTTTGCTGTCTACTTCTTACCAGGGATAGACATGTATGCAGAGAAGAGGGATCACTTGTGTAATAGGCAATTTAATATTTTTGTAAATTGCATCCTAGTCGGTTAAATGTATTTCTAGTCAATACCAATTTATCAAAGCGTCCATGGTTGATTTAATTGTAGACTAGCTCGCTTTGAGTTGTACTGGGACAAGTTCCGGACCAAACGTACACTAATCTACAGTCTTTAGCCAGTCTTTTTATTCATTACTTACCGATGCTGGGCAGGAGGACGTTTTATTAGTTCCAGATCCATGACAAGCCCATTCTGAGGTAATGCTACTCCATGACCAGCTGTATCCCTCTTTTTAAACCACAAATGTCTTCATGTTAGTTTCATACCGTAACCAGTTCCACTGATGGTAAACAATTGAAGACATTGGCCAGTTTTATTTCATGGAAAAATACTAAGCTTTGAACCTTTGCATGGTGGGAGTATAAGGGAACATAGACAACTGTCAATAATACTTGATTTAAAACCTGAACTCAAACATAGGGATTGTGTGAGGAGAAATGTCATCTACATTTGACAAACCTAGAATCAAAtttatgaataaaaccaataaCTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1441940 lncRNA upstream 22230 15671900 ~ 15674666 (+) False G1261941
TU1441936 lncRNA upstream 22230 15672063 ~ 15674666 (+) True G1261941
TU1441935 lncRNA upstream 26975 15669548 ~ 15669921 (+) True G1261940
TU1441900 lncRNA upstream 32130 15664087 ~ 15664766 (+) True G1261917
TU1441901 lncRNA upstream 34359 15662053 ~ 15662537 (+) True G1261918
TU1441970 lncRNA downstream 10724 15717274 ~ 15718014 (+) True G1261967
TU1442023 lncRNA downstream 65364 15771914 ~ 15772162 (+) True G1262013
TU1442024 lncRNA downstream 65646 15772196 ~ 15772465 (+) True G1262014
TU1442037 lncRNA downstream 80331 15786881 ~ 15787081 (+) True G1262027
TU1442044 lncRNA downstream 93371 15799921 ~ 15800162 (+) True G1262034
XM_021562450.2 mRNA upstream 162116 15532470 ~ 15534780 (+) True LOC110489682
XM_036943853.1 mRNA upstream 331136 15345480 ~ 15365760 (+) True LOC110489655
XM_036943834.1 mRNA upstream 503846 15166247 ~ 15193050 (+) False LOC110489660
XM_036943835.1 mRNA upstream 505409 15166725 ~ 15191487 (+) False LOC110489660
XM_021562418.2 mRNA upstream 549062 15142985 ~ 15147834 (+) False LOC110489664
LOC110490928 mRNA downstream 33474 15740024 ~ 15747900 (+) True LOC110490928
XM_021562455.2 mRNA downstream 44239 15750789 ~ 15759102 (+) False LOC110489687
XM_021562454.2 mRNA downstream 44241 15750791 ~ 15759102 (+) True LOC110489687
XM_021562457.2 mRNA downstream 99668 15806218 ~ 15807665 (+) True LOC110489688
XM_021562458.2 mRNA downstream 108893 15815443 ~ 15819297 (+) True LOC110489689
TU1440825 other upstream 501951 15193012 ~ 15194945 (+) False LOC110489660
TU1440827 other upstream 501951 15193012 ~ 15194945 (+) True LOC110489660
TU1440741 other upstream 674843 15020992 ~ 15022053 (+) True G1260946
TU1440672 other upstream 782773 14905420 ~ 14914123 (+) True LOC110489673
TU1440507 other upstream 1028357 14666659 ~ 14668539 (+) True G1260745
TU1441984 other downstream 29380 15735930 ~ 15736417 (+) True G1261980
TU1442095 other downstream 186418 15892968 ~ 15894164 (+) False mcmdc2
TU1446004 other downstream 3153561 18860111 ~ 18862511 (+) True LOC110489737
TU1446540 other downstream 3967563 19674113 ~ 19680105 (+) True epb41l3a
TU1448574 other downstream 5133745 20840295 ~ 20841398 (+) True G1267949

Expression Profile