RNA id: XM_036943864.1


Basic Information

Item Value
RNA id XM_036943864.1
length 5059
RNA type mRNA
GC content 0.47
exon number 16
gene id LOC110489690
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 15821701 ~ 15845199 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTCGGCGGGATCGACAAAATCTGAATGCGAAAATAACAAAATAGAAGTACAGTGGGAGGGAGAACAGTGTGTTGCCTACAAGGCAGGTTAGCTAGCTATACATGTTCACATCCTATTCGATCGGATATTGACATTGCATGCATCGCGGTGACATGCAAAATATAAGGAGATGCGTTTTTATTTACGATTGCATACAATTCCTACAACAAGAAAGAGTTTGACATGAAAGTGAACCGCTAGCTAACCAGCGAAAGTGTGGCACTGTATTTTAGGCTACTGTCAGAAAATAAACTGGAAGATGACAGACATCGGACTGCATGGATAACTGTCCATGGAGAACATCTAATTCTCTTTTATATGGATTTTAGACCAACTACAAATAGAGGATTTCTTATTTGAAAAGCTTTGATCAGCTGTCATTATGGCCAACATAAAGTCGCGCAGTGAGTCTGAGGATGAAGATCTACACTCCACAGATCCTGAGAGTAAGGACAAGAGCAAAGACAAGAAGATACTGTGCAAAGGCAAATGGTCTCGCGATGAGGATGAGAGGCTGAAGAAGTTAGTGGAGCAGCATGGAGCAGACTCCTGGAAATTAGTAGCTAATAATTTTCAaGGTAGGACAGATGGCCAGTGTCAGCACCGCTGGCAGAAGGTGCTCAACCCAGAGCTGGTGAAAGGACCCTGGACAAAAGAGGAGGATCAGAAGGTGATTGACCTGGTTCATAAATATGGCCCCAAGCGCTGGTCTGTGATTGCCAAGCACCTGCAGGGGCGGATCGGGAAGCAGTGCCGTGAGCGCTGGCACAACCATCTGAACCCTGAGGTGAAGAAGTCCTCCTGGACCCAGGAAGAGGACAGCATCATCTACCAGGCCCACAAACGCCTGGGCAACCGCTGGGCCGAGATCTCCAAGCTGCTGCCTGGAAGGACAGACAACTCCATCAAGAATCACTGGAACTCCACCATGAGGAGGAAAGTGGAGCACGAGGGGTACCTCCAGGAGGGCTGCAGGGGATTCAGCTCAGAGCATGGGGGGTTGAAGCGACGCCACCACAGACCCTGTGTCCCCCAACTAGACACCCCCCACGGTGGGCACAGCCCTCTAGGCATAGCTGGACCAACTCAGCTTGGGGGTTACCTCTATAGCCCTCACTGTGGCCAGCTGATGGACAGCCTCCCAGACTCCTCCAGCTACTTATTGCCGTCCTGCCATGATGATCCAGACAAAGAGCAGAGAATTAAGGAGCTTGAGCTGCTGCTTATGTCAGCAGAGACCGAGGTCCGGAGACAGGCCCAGTGCCGAGACCCATGTagTGTGGAGCATTACTCCAGCTGGGCAGACAGTGTGTCAGATGACACCATgaccaccagcagcagcagtcTGGAGGATCAGAGTGAGGGAGGCTGGAGGGGGGCAGAGGAAGGCCAAGGGCCACCAGTGGAGCAGGCTGAGGGGGGCTGGAGGGGGGCAGAGGAAGGCCAAGGGCCACCAGTGGAGCTGGCTGAGGGGGGCTGGAGGCTGGTAGAGGAGGGCCAGCACCAGGTTCAGCGCCATGTCTCCCCCAGTAAGTTCCTGGCTGTGGAGGCTAGTTCTGTGCTCTCCACCCTGCAGACCATCCCCGAGTTCGCAGAGACCATGGAGCTCATCGACTCGATGTGTCTGGCTCTACAGGACCCTATGACGTGGAGCGAGGCGGCCAGCTTTGACGTGTCTGAGGCGACGACCCCCCCGAAACAAACACAGGGGAGCTACGTACCCCAGGGGAGGACCACAGAGGGGATGAGGTATACCATTGACCCCTCCAACGACATCTCAACAAAGCACTGTGCCCCCATGGGTCAGCGGAAAGTCCACACCCCGAACAACGTGCCCAGACCAGGCCTGCCGTCcctggggaggaggaagaggacagagagggtggaCCAGTCCCCTGATAGGAGCCGTGCGTCCTTCTTAGAGTCACCCAGCATCAACTCGCCCAAGAACACCCCCACAAAAGCACGGCCTTTCACCCTCTCCCAGTTCTTCAACACATCAGGAGGAGAGCATCTGAGCCTGGACAACCCTGCTCTGACCTCCACCCCGGTCTGTGGCCAGAACTATCTCCTCAACACACCCTTCCAGAAAGAGACCACGCCCAAACACCAGAAAGAGAACATGGGTTTCAGGACCCCTAAGATTCATAAGACCATAATGGTTCCGACTCCCAGAACTCCTACTCCATTTAAGAACGCCCTGGCCGCCCAGGAGAAGATGCATGGGCCGCTAAAGATGGTGCCCCAGCCCCTGGCCTTTCTGGAGGAAGATATCAGGGAGGTGCTGAAGCAGGAGATAGGATCAGACATCTTCACCAGAGAACCACAACCAGACTTCAGGACATGGAAACATGATGTGGATGGCCCAGCCAGGAAGGTGCGTAAGTCCCTGGTGCTGGACTCCTGGGGGAAAGACTGTCTTAACGTCCAGCTATACCAGGACCAGCTCAATAACGCACTGGTCCCAGAGGAGAGTTTGTTAACCAGCTCCTTATTGATGACCCCACTcccggagagagacagagaagagcgcCCCTGCCCCCCCTCGTCTGGGAAGGAGGGGTCCTGTGGCCCCCGGCGCCACCTTCCCAGCCCCCGCAAGAGGAAGAACCCCCCCTCGGTCAGAATTTCCCACCACGATTCACCTGGACAGGTCAACAACCAGTGGGAAGCAGTGGTTTATGGGAAGACGGAGGACCAGCGGATTATGACAGAGCAGGCCCGGCAGTACCTGAGTAGCACTTACACGTCCACCGGCTGCACCTCGAGGGCGCTTGTGCTCTGAGACCTACGTCCTCACACACTACATCTGTCCACGCTCCTTCTCATAATGACTCTTAACATACTTAGACAATCTGGTGTAGATCTACTCAAATCATTTAGACATTTGTGTATTGATAAGATCGGTAACTGAACACTCAAGTGTGCCACAGAATACTTTACAGAAAAGGTAAGACTGTCGTTTTTTCTGGGTCACACTGCTTGGTTGTCATAAATTGCTTTGTTTGTCTTTTGAATCCCACCAGCCGTTGACCTCCTAGCCAAGTAACAGGGTTGTACAATACTCGATTTCCTGCACTAGTTTATAATGTGTTAAAACTGAACAACCTGCACATACAGTAAGTAGCAAGCTGTAGAAATAGTTGTTGTATTACTACTGTAGCAGTGACTGCTTATGAGTTTCATATTGTTAATATATTGTTTAAACAAAaatgaaaaaatacattttatgatgTAACATTACATGTATATGTATATTCAGCTTGTTTGTAGAACTACCCTGTACTGCTAAACCTGTTGTAATGAagtcttgagagagagagagaaagagaggagagagagagagctgtcagTATTGCACTACTGAGTAGGGGTTGGCTGCAGAGGAACGGTCAGTGTTGAGGAGGTAACTGGATAGTACAATGAAGTTTCCATTCCAAGGCCATACTTCCCTTTAGCAGTCTCAAATTGAGACTTTTGTTGAATGTATTTCATAGCTTGAAACTGCGAAGAAACTCAAAATGGAAGGGTACCTTTTTtgttcatttgtttgtttttatcttATTTAATTTATTATCTGTTCTCTAAAACGTAGATATTAATATAAGTGTAAATTGAACACAAAGTTTCCATTGAGAAATGTACTTTTGCTGACAGACAGTCTAAAACCCTTCTGAAACCCTTTGACCTATAAGGTCACTTCTGCCACACTGAACCTAGATCAGAATCCAGTTGTCATGTTTGGTGCAGACACATAGCGCTCATGTCATCAGTGTGCTAAAGCAAGCATTTTAGTTGAGGTTCTATTTATTCAATGTttactaatttatttatttcaaaaaaatggaaaaataaaTGATCAAATAATGATATTTTCTTTCTATCAGAAAAAGGATTGGGCTACCTTTCAACTCATTTCTACGAATTAGACATAACGAGCGAACATGCACTACCACTAATCTCTTTCATTCAGTCATTGTTTTAACTATCCGATTTAGTTAATAACCATTGTATTGTGACATCACCGAGTTGTTGATATTGGTAGAACAGTTTCCCCTGGAATCAGAGTTTCTTTGTATTCTCCATAGGTAGTAGCAGGATTCCGTCTCCAACCTCTAATAGACAAATTGCACTTTTCTCATCGTTTAAGTgttgttttgttcatttgtttgtgtgtgttttgtttgtttcgTTTATTTAAATCTAGTGCCATTGGATGAATGTTTCAcgacatgtgactattaaacactgacaTACAGATGTAAAGACAGAGCTGTTTAAAATCCATTGTTTATAAGTAACAATTACAAGTACAACACAAGATATTCAACAGACAATGAAAGATAAAGCTTTTACGTCTTTATGTGACAATGCGGTCTTCTATGGCTCTGATTGGTTGCCTCTATAATAATAGGGATGCAGCAGAGTATCTATGGTCCCTGTGGTGATGGTGGGTGTCATTTGTTCCGACAGTCTTCCAGCTGTTTAGAATCTAGATTATAATGGGGATTATCCAGCATTAAGTGTGTTTGAGAATAAGAAGGGAATCTCCTCAGGAGAGATCAAGTGGAAAGATCATGTATGTTCACCCTCTCTGAACTCCACAGAACCACACTTTCTGAACTTTCTTATTTTCCGACATCTAACAGCTACAGTAAATATGGATATATGGTTGTTCTCTGTTCTGTCGGTTGGTTTGACTTCAGTATGTTTTGTTTGTAACATGTTTGTATGTTAACACTTGGACATCTAACCCTAGGTTATAAGGGAATTCAGTATATTTATAGTAGCAGTTGTTGTCATAATCATGCATGAACAATAAGCAGTACGTTGAACTTTTCAGTGATCATGTTTTTACTGCAACTACAATAATCACAGACGTAACACTTCCATTATGTCATTTTCAAAGTTGACTGTATTTTCTGCTGAAATCATAACCAGGTACCATAGAATTCCCGCCAACTGCCATTGTAACCATGTACTTAATATGTGATAATAATAAAATGTTATTGCATTGCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1442604 lncRNA downstream 4259 15816037 ~ 15817442 (-) True G1262510
TU1442602 lncRNA downstream 6809 15814645 ~ 15814892 (-) True G1262508
TU1442601 lncRNA downstream 7255 15814237 ~ 15814446 (-) True G1262507
TU1442600 lncRNA downstream 8426 15813053 ~ 15813275 (-) True G1262506
TU1442594 lncRNA downstream 17764 15803731 ~ 15803937 (-) True G1262501
TU1442615 lncRNA upstream 3216 15848415 ~ 15849185 (-) True G1262521
TU1442621 lncRNA upstream 49268 15894467 ~ 15897953 (-) True LOC110489693
TU1442661 lncRNA upstream 89502 15934701 ~ 15935014 (-) True G1262563
TU1442675 lncRNA upstream 111420 15956619 ~ 15956894 (-) True G1262573
TU1442677 lncRNA upstream 116113 15961312 ~ 15964183 (-) True G1262574
NM_001124286.1 mRNA downstream 58723 15761444 ~ 15762978 (-) True LOC100135941
trnay-gua-4 mRNA downstream 72387 15749229 ~ 15749314 (-) True trnay-gua-4
XM_036943860.1 mRNA downstream 86325 15706942 ~ 15735376 (-) True LOC110489684
XM_036943859.1 mRNA downstream 86337 15706942 ~ 15735364 (-) False LOC110489684
XR_002468613.2 mRNA upstream 49269 15894468 ~ 15898010 (-) False LOC110489693
XM_021562462.2 mRNA upstream 55281 15900480 ~ 15904068 (-) False LOC110489694
XM_021562463.2 mRNA upstream 55281 15900480 ~ 15904342 (-) True LOC110489694
XM_021562464.2 mRNA upstream 73196 15918395 ~ 15923805 (-) True LOC110489696
XM_036943872.1 mRNA upstream 93038 15938237 ~ 16035281 (-) False LOC110490929
TU1442597 other downstream 14084 15806250 ~ 15807617 (-) True G1262503
TU1441760 other downstream 315503 15505698 ~ 15506198 (-) True G1261796
TU1441538 other downstream 631885 15189546 ~ 15189816 (-) True G1261602
TU1441452 other downstream 722985 15098040 ~ 15098716 (-) True G1261529
TU1441492 other downstream 742349 15077710 ~ 15079352 (-) False G1261562
TU1442665 other upstream 144087 15989286 ~ 16035122 (-) True LOC110490929
TU1442865 other upstream 430810 16276009 ~ 16276552 (-) True G1262745
TU1443617 other upstream 800445 16645644 ~ 16646417 (-) True G1263444
TU1444458 other upstream 1616629 17461828 ~ 17462977 (-) True G1264199
TU1445577 other upstream 2338592 18183791 ~ 18184123 (-) True G1265249

Expression Profile