RNA id: XM_021562461.2


Basic Information

Item Value
RNA id XM_021562461.2
length 3671
RNA type mRNA
GC content 0.49
exon number 13
gene id mcmdc2
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 15885437 ~ 15895996 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACAGTTCAAATGTTCAAGTCGCGTGATATCTTGACTGTGTGACTAGTCTCTTCAGACAACgctttagctaacgttagtcagTCGGTAACAGAAAATGGAAAACGTTCTCTTACTGAAAGAGTCAATTTTGTCTTTTCTAGACAGAAGTGGAGCTCTTCTTCAACTTGCCGAAGACTGCAAACCATTCAACGACATCCAGCGAAATGAAGCTGTGTATCGGTTCTGTATCCGTGTGAACCCTTCAGACCTAATCGAACTGGATCCTAGATTGGGTGATTGTGTTCTCAATGACCCCCTCAAAGCTACAGCACTGTTTCAATCTGTTTGTTTTCTGTCAATAAAGACACTCTCCCTCATAGAGAAAATCCACACAGAAAGTCAGGTGAATGTGATCCTGAAGTTTACACACCTACCTCCGTTCCCTGAGTACACCTTGGACCTCTGTGAGTTTCCCTGTGGTTATGGCCCCATGAGGCCTGTTGCCATGGAGGGCTTGGCCATCGCGATGACTAGGGTCTCCAAGTACACTCAGGGAGCCAGGTTTCTCTGTTCTGAGGAGGACTGTCCCTGCTCAACAGGGTTCCATCACATCAGAGTGCACGCACCCGGAGCCACTGAGTCAGCCACAGTGAGGAGTGACTTCAGCTGCCTGCTCTGCTCCTCTCACCTCAAAGAGGACATCAAGTTCCGGGTCCTGGGGGACAAGCAGCTTGTAGAGCTGATCCATGTTAAAGCACTGGATGTCCTGAAAGTCCATCCTCCCAGTGCCCTCAGGTACCAGTCTGTCACCCTGTTTCTCAGAGATGAGCTGTGTAACTCCATGAGGATTGGACGTCTGTACAGGGTGCTGGGCATACCGGCCCATGTCCACCAGTGGCCCAACGTCACCTGGAGTGTGGAGGCCAATAGCGTTCAACCGTGGGAGCCTGAATACACGGGCACCATCAGCTCTAACTTCCAGGCCCTGTTGACGGCAACAGCCTGTTCCCCCTGGAGGTTCTCTGCCATTGTGGCTAACACGTTTGGATCCCCTGTGGTTCCCCCGGGCTTGTACAGCACTCTGAAGCTGGGCCTGCTGCTCAGCCTGGTCCAGGGCCGGGAGGACAACCCAGACTCACTGCACTGCCTGGACCTGCTAGCCCTGACGACTGACACACTCATACTGGAAAGGCTGATGACGTACAGCCTGGGTCTGGctggccgtggggtgagacaccCTGCGACAGGGGAGATGTTTGCCTCTCTTTCTCGTGATGAACACGGAGCAGGCACGGCTAACATCCACGCTGGCTCCGCCCTGCTGGCCACTGGGGGCGTCTGCATGCTCGGGGACCTGGGCCACCACAGGAAAGATAAGATGGACGCCCTTCAGTCAGCTCTGGAGAGTCGGACAGTGTCTGTGATCATCCCAGGGAAGAAGTATGGAGAGGATGCTGACCAGCAGATCTCCTTCCCTGTCCAGTGCAGCTTCTGGGCCTTGGCAGACTCCACAGCTCCCTCAAACAAGACCACCAGGACTGACAGTACAGTGCTGGGAACAGTGgacatgGGCTCGGTCCCTGCCCAGTTGGCTGAGGCCTTTGGTCTGGTGATCCTGTGTCGGGAGGCAGGGGGAAAGCAAGCCCTGCTAGCCCAGACGGTGCACACCCTCAGACAGGCAGTGCAGCCCGGAGAGCCCCTCTACCCATCCTGCATGCAGTTCACCACACAGGACTATAAGGAGCTTCTGGCCCACACCCAGAGGATCCAGACAGAGCTGAGCCCCGGGGCAGAGATGATGATACATGGCTATTACATGGCCAGCAGAAGGGTCCGCTCAGACTCGGGCCATGGTGCAAAGGTGTCTGTGGCCTCCATCAAGCTACTGATCTCCCTGGCTGAGGCCCACAGTAAGCTGTGTCTGAGAAGCACAGTGCTGGAGGAGGATGCAGTGATCGCTGTGTTGCTGTGTGAAAACTCCATCACTCTCAGACATGGAGCCTCAGCGCTTGTTATCCCACCCGACGCAGCATTTCCCTGTGACCTGTGTGACCTGGAAGCTCTCCACAGGAGAGACCTTATCCTGGAGCAGCTCCAACAAAGCATCCTGCACTTTGTCTACGCCTACGCACCCGGGGCCACCAGCTACATCACTGAGGAGGAATAGGACCACAGCTAAGTTAAAGGATTTTTCTATATTGAATTGCAATGGTGAAATGAGCTACTCAGAAGAAGAAACGTTCCATAAGCACAAAGCGCTTCAAATTGAGCGTTtctcctctgccaagataatccatccacctgacaggtgcgtCATACCAagtagctgattaaacagcatgattgcTGTAGCCACATATCAGGTTGAGGGAGAgtggaattggcatgctgactgcaggaatgtccaccagagtattgaatgagaatttggcagtacatccaaccggcctcaccgGTGATAAAACTAATTCTGACTGGGTGGGCCTATTCCCTCCCAGGCCAACCCATGGCTACGCACCTGCAGTCAattgaaatccattgattagggtCTAATACATGAACTGTAACATTCATATTTTTCAGTGTAATTCAATGTAGGCAGAAAAAAGATTGCGATTAATGTACcataaaatattttatttcatAACGGGGCAGAATAAAATCTgattaaaacaaacatttaaccTTAAGCAGGGGAGTCAGACCAAGGTTGTGCTTTTTTTGACAGGCAAGAATGGTGAAAATAGGGTGATAGTTTAGGTCTCCAGGGTCATATTTGTGAAGGAGTTCATGCACTGCTTTCCAAACCTTGTGAATTGTCAACGAATAGAAGAAATCAGTTAAATAAATGACCATTGTCTAATAAGATTAGCCATCAACCTACAACTTTCTACCATCGTGGGTTTAGTTACAATGCTGGTAATTCAAATGAATGGCTTTTCAGCAGGGTAAATTAGCAGAAATGTCAGAAAGGGCAtcaattccatttaaaatgaATGGACACCTCTCAACCCAGGAAATAACTCCCCTACTGCAGGCCTAACAATCCTGCATGATGAAATAAGAGTCTCAAACCGTAGTCAGGGATTGCAGGTTTAATGATTGCAGGTAGCCCCTGCCACGAGGTGCACCGCAGATATTGAGCTAAGCAAGATGCTCACGCTTCAACACTCTTAGTTGTGGAAATTGACCCCTTTACTCACTGCATCTATACCATATCGCTGCGTCTACCTATAATGATCAATGCTAATATTGGCAGTTCAGTTAGTCACAGCATCCCAATTTAGTCAGATCAGTAAATAGCAAAAGTGAGAAGTCATCACAACTCCAGTAGAAGACTGAAGGAAACCAGTTGGCTATTTAGCCCTCACACTCACCATAGGGTTGAGATTTAAGTCTTCATATTCCACATACTGGATCATCAAACCCAATCtaggagagaacagtctattagcATGACTATCATTTGATTGTAGTTAGGCAAAATATACAAGCAATTATACTGTAGTTCAGGAAGTCTCTCTCAGCATCCCAATTTAGTCTGATGGGTAAACGGCAAAATGTAGAACTCATCACAACTCCAGTTTCGTGCACATTTGCCGATCAAAGACATGTTGGGCCCTCAGattaaaaataatattttactCACCACAGGGCAAGATCTTCAATATACATCCTGGCCCATTAACTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1442057 lncRNA upstream 59368 15825727 ~ 15826069 (+) True G1262047
TU1442056 lncRNA upstream 60514 15824472 ~ 15824923 (+) True G1262046
TU1442055 lncRNA upstream 62247 15822919 ~ 15823190 (+) True G1262045
TU1442054 lncRNA upstream 63197 15821732 ~ 15822240 (+) True G1262044
TU1442053 lncRNA upstream 64768 15820256 ~ 15820669 (+) True G1262043
TU1442123 lncRNA downstream 50473 15946009 ~ 15946843 (+) True G1262108
TU1442126 lncRNA downstream 52447 15947983 ~ 15949078 (+) True G1262111
TU1442138 lncRNA downstream 65766 15961302 ~ 15965882 (+) False G1262122
TU1442139 lncRNA downstream 65766 15961302 ~ 15969499 (+) False G1262122
TU1442142 lncRNA downstream 65766 15961302 ~ 15964228 (+) False G1262122
XM_036943867.1 mRNA upstream 71 15848900 ~ 15885366 (+) False LOC110489691
XM_036943869.1 mRNA upstream 71 15848900 ~ 15885366 (+) False LOC110489691
XM_036943868.1 mRNA upstream 71 15848902 ~ 15885366 (+) True LOC110489691
XM_021562458.2 mRNA upstream 66140 15815443 ~ 15819297 (+) True LOC110489689
XM_021562457.2 mRNA upstream 77772 15806218 ~ 15807665 (+) True LOC110489688
XM_021562465.2 mRNA downstream 194960 16090496 ~ 16114214 (+) False LOC110489697
XM_021562467.2 mRNA downstream 199223 16094759 ~ 16114214 (+) True LOC110489697
XM_021562473.2 mRNA downstream 224809 16120345 ~ 16125640 (+) False LOC110489699
XM_021562471.2 mRNA downstream 224810 16120346 ~ 16125640 (+) False LOC110489699
XM_021562472.2 mRNA downstream 224810 16120346 ~ 16125640 (+) True LOC110489699
TU1441984 other upstream 149020 15735930 ~ 15736417 (+) True G1261980
TU1441924 other upstream 178898 15696925 ~ 15706539 (+) False LOC110489686
TU1441927 other upstream 181163 15696925 ~ 15704274 (+) False LOC110489686
TU1440825 other upstream 690492 15193012 ~ 15194945 (+) False LOC110489660
TU1446004 other downstream 2964575 18860111 ~ 18862511 (+) True LOC110489737
TU1446540 other downstream 3778577 19674113 ~ 19680105 (+) True epb41l3a
TU1448574 other downstream 4944759 20840295 ~ 20841398 (+) True G1267949
TU1449889 other downstream 5890685 21786221 ~ 21794253 (+) False slc12a7b
TU1451171 other downstream 7237323 23132859 ~ 23136721 (+) True LOC110489812

Expression Profile