RNA id: XM_036943873.1


Basic Information

Item Value
RNA id XM_036943873.1
length 6444
RNA type mRNA
GC content 0.54
exon number 38
gene id LOC110490929
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 15938237 ~ 16035283 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cacaccctgctgccTCACTGCGGCCGTTTTTTAACGTGCGTGACGTCGCTTCCTTCCAACATGGCGCAGCTAGGCAGGTTGCTAATGGCAATCTGAGGGATTTACCCCACCTTCTGTCTTTATTTATGTCTGTATGTTAGGGCCACTGCCGCTGTCCTCTCGAATAGAACACATCGGTCTGGAACGGCTGCTGCCCTTTGGGACAGGTACTACTCCTCGCCCCAATTCCGGCGCGCCATGTATGAAGGCAAAAAGacgaaaaacatgtttttaaccaGAGCTTTGGAGAAGATCCTGGCCGACAAAGAGGTTAAAAAGGCTCACCATTCGCAATTGCGAAAAGCCTGCGAGGTGGCACTCGAGGAAATAAAGGAAGATTCTGAAAAATTAAGTCCTCCTCCAGACAGCAAATCAGATTCTAGCACTCTTCCGCCAATCAAATCAAAGACCAGCTTTGTCGAGGCCGACAAGTACTTCCTGCCGTTTGAGTTGGCATGTCAGTCCAAATGTCCCCGCATCGTCATCACATCACTAGACTGTTTACAGAAGCTGATAGCGTACGGCCACCTGACAGGCAGCGGTCCAGACAGCGCAGCCCCGGGCAAGAAGCTCATTGACAGGATCATCGAGACCATCTGCGGCTGCTTCCAGGGACCACAGACAGATGAGGGGGTGCAGCTACAGATCATTAAGgcCCTGTTGACGGCGGTGACCTCACAGCACATAGAGATTCACGAGGGCACGGTGCTGCAGGCGGTCAGGACCTGCTACAACATCTACCTAGCCAGCAAGAACCTCATCAACCAGACCACAGCCAAGGCCACACTCACTCAGATGCTCAACGTCATCTTCGCCCGCATGGAGAACCAGGCACTCCAGGAGGCCaagcagatggagagggagaagcacCGGCAGCACTCCCCAGTCACCCagcaacaggaacaggaacaggactcGCCCCAGCTCCAGCAGCACACCTATCCCACAGCCAAGGGCCTTCCTCGGGAGGCCAACGGCCCCACCACCCCCTCTACACCCACGcccacctccaccccctccactccctccacatCTACACCTGCCCCGGCCCCTAAGGGCAGCACGGCTGGGGCAGGGGACCCCCAAGAGGGCCAGGGGGCCACGGAGGAGAACCAGGGGGCCACAGAGGAGGAGCAGGCATTGCAGGGGGAACCGGGGGCGGTTTATGAGAGCACGAACCCAGAGAATGGCTCTGAGTTCAGCACAGCAGAGAACCACCAGACAGAGGCAGACCAGCccacagggttggGTGCCGCTCAGCATGATCAGGAAGcagtagaggagggggaggagcctAACTATGAGGAGAAACCCCAGGAGATCGTCCAGAGCATCCTACAAGAGGTCGTCAACACTGTTGTTGGAGATGCCATGGAGTCCGCTGGTGAGACCGAGCTGCCCACAGAGGTCACGGAACCTGCTAAGGTCATCAATGAGGTCATCACCAAGGCAACAGCGATCACAGAGATGGTAGAAGACGAGGGGGACAGCGAGAACGTCCACGCCAATGGAATCCCCGGCACGCCCATCTCTGCCAGCTTCCCTCCGTCGCTGCCCGATGACAGGCTGTCTGTCTCCTCTAATGATACACAGGAGTTGGGAGCGACCACAGGCCCAGTACCAGGTGCTAAGTTCTCCCACATTCTCCAGAAGGATGCCTTCCTAGTGTTTAGATCGCTCTGCAAGCTGTCCATGAAGCCTCTGTCAGATGGTCCCCCAGACCCAAAGTCCCACGAGCTGCGCTCCAAGGTGCTGTCCCTCCAGCTGCTCCTGTCCATACTGCAGAATGCTGGGCCCATCTTCAAGACCAACGAGATGTTCATCAACGCCATCAAGCAGTACCTGTGTGTGGCACTGTCTAAGAACGGTGTCTCCTCTGTCCCTGAAGTCTTTGAGCTCTCGCTCTCCAtcttcctcactctcctctcccactTCAAGACCCACCTCAAGATGCAGATCGAGGTGTTCTTCAAGGAGATTTTCCTGTATATTCTGGAGACGTCAACAAGCTCCTACGACCATAAATGGATGGTTATACAGACCCTAACCAGAAtatgtgcagatGCCCAGGGTGTGGTGGATATATATGTGAATTATGATTGTGACTTGAATGCTGCTAATATCTTTGAGAGGCTGGTGAATGACCTGTCGAAGATCGCACAGGGCCGGGCAGGCCACGAGCTcggcacaacaccactccagGAGTTGACCCTGAGGAAGAAAGGCCTGGAGTGTCTGGTGTCCATTTTGAAGTGTATGGTGGAGTGGAGTAAGGACCAGTATGTCAACCCCAACTCCCAGACCAGCCTTGGTCAGGAGAAGCCCTCGGAGCAGGAGACCAATGAGACGAAGGCCCCGGAGACCATCAACCAATACGGAAGCATCAACTCGCTGGACTCCACAGCCTCGTCTGGCATCGGGAGCTATAGTACACAGATGTCAGGGACAGACAACCCCGAGCAGTTTGAGGTTCTCAAACAACAGAAGGAGATCATCGAGCAGGGCATTGACCTGTTCAACAAGAAACCAAAGAGGGGCATCCAGTACCTCCAGGAGCAAGGTATGCTGGGAACCACCCCGGAGGACCTCGCTCAGTTCCTGCACCAGGAGGAGAGGCTGGACTCGaCTCAGGTGGGTGAGTTCCTGGGGGACAATGATCGCTTCAATAAAGAGGTCATGTATGCCTATGTGGACCAGATGGACTTCCAGGGCAAAGACTTTGTCTACGCTCTCAGAACATTCCTCGAGGGCTTCCGTCTCCCGGGAGAGGCTCAGAAGATCGACAGGCTCATGGAGAAATTCGCTGCGAGATATCTAGAATGCAACCAGGGGCAAACTGAGTTTGCAAGTGCAGACACTGCGTACGTCCTTGCCTACTCAATCATTATGTTGACAACAGACCTTCATAGTCCGCAGGTTAAGAACAAGATGACTAAAGAACAATACATCAAGATGAACAGAGGGATCAACGACAGCAAGGATCTACCGGAGGAGTATCTGTCGGCCATCTACGACGAGATCGCAGGGAAGAAGATCGCTATGAAGGGGACCAAGGAAATGACTCTGAAATCCAACAAGCACAGTGTGGCCAGTGAGAAGCAGCGGCGGCTACTGTATAACGTAGAGATGGAGCAGATGGCTAAGACAGCCAAGGCCCTGATGGAGGCTGTCAGTCACGTCCAGGCTCCCTTCACCAGCGCCACACACCTGGAGCACGTCAGACCCATGTTCAAGCTGGCCTGGACCCCGTTCCTAGCAGCCTTCAGTGTGGGCCTCCAGGACTGTGACGACACTGAGGTGGCTTTTCTCTGTCTGGAGGGAATACGCTTTGCCATCCGGATAGCCTGCATCTTCACCATACAGcttgagcGGGATGCGTACATCCAGGCCCTGGCACGGTTCACCCTGCTCACAGCCAGCTCTGGCATCACTGAGATGAAGCAGAAGAATATCGACACCATCAAGACTCTCATCACCGTCGCCCACACAGACGGAAACTACCTGGGCAACTCCTGGCACGAGATAATGAAGTGTATCAGTCAGTTGGAGCTGGCCCAGCTGATTGGGACGGGGGTGAAGGCCAGGTACATCTCAGGGACGGTTCGGGGGAAAGAGGGCTTCATCAGCAGCACCAAGGAGCAGAGCAACGATGAATACCTGGGCCTGGGTGGGACAGTAGACCGGAAGCAGATCCTCAGTATCCAGGAGTCCATAGGAGAGACCAGCTCCCAGAGTGTGGTGGTGGCTGTGGACAGAATATTCACAGGTTCTACCAGACTGGATGGTAATGCAATTGTGGACTTTGTGCGCTGGTTGTGTGCTGTGTCTATGGATGAGCTGGCCTCGCCCACACACCCCCGCATGTTCAGCCTGCAGAAGATAGTGGAGATCTCCTACTACAACATGGGACGTATCAGACTGCAGTGGTCCAGGATCTGGGAGGTCATTGGAGACCACTTCAACAAGGTTGGATGTAACCCCAATGAGGATGTAGCTATCTTTGCAGTGGATTCTCTCCGGCAGCTGTCCATGAAGTTTCTGGAGAAGGGAGAGCTGGCAAACTTCAGATTCCAGAAGGACTTTCTGAGGCCTTTCGAGCACATCATGAAAAAGAACAGaTCTCCAACGATCAGGGACATGGTGGTGCGCTGTATAGCCCAGATGGTCAACTCACAGGCGGGGAACATCCGGTCGGGCTGGAAGAACATCTTCTCAGTGTTCCACCTGGCTGCCTCGGACCAGGATGAGAGCATCGTAGAGCTAGCCTTCCAGACGACGGGCCACATCAGCATGAATGTATTTGAGAAGCACTTCCCAGCCACCATAGACTCCTTCCAGGATGCAGTCAAGTGTCTGTCTGAGTTTGCCTGCAACGCCTCCTTCCCCGACACCAGCATGGAGGCCATCCGTCTCATTCGCCACTGCGCCAAATACGTCTCTGACAGGCCCCAGGCATTCAAAGACTACACCAGCGATGACATGAATGTAGTCCCAGAGGACCGGGTGTGGGTGAGGGGGTGGTTCCCCATCCTCTTTGAGCTGTCCTGCATCATCAACAGGTGCAAACTGGACGTCAGGACCAGgggtCTGACGGTGATGTTTGAGGTGATGAAGACCTATGGACACACCTTTGAGAAGCACTGGTGGCAGGATCTGTTCAGGATCGTCTTCAGGATATTTGACAACATGAAGCTGCCTGAGCAGCAAACTGAGAAAGCAGAGTGGATGACGACGACCTGTAACCACGCACTTTACGCCATCTCTGACGTGTTCACGCAGTACTTTGAGACTCTCAGTGACGTTCTGCTGGATGACATCCTGTCCCAACTGTACTGGTGTGTTCAGCAAGATAATGAGCAGTTGGCTCGGTCAGGCACCAACTGTCTGGAGAACGTGGTCATCCTGAATGGAGAGAAGTTTACTCCGGAGATCTGGGACAAGACCTGTAACTGCATGCTGGACATCTTCAAGACCACCATCCCACACGCACTGTTGACATGGAGACTAGCAGGAGCAGAGGGAGATCCCATGACACCACAGGATGTATCAGACAAACAGCTGGATTCAATTTCCCAGAAGTCAGTGGACATCCAGTCCCGTTCCGAGGACCAGCATTCCATCAACAGTGCGGAGAGGATTGCCATGGTGACCCGGCGGCAGAGTCAGTACAGCGCAGGCATGTGTGAGGACAGCCCCAGAACCCGGACTCCAACAAaGATCCAGGAGCAGAGGTTATTCTCAGGCTTGCTCATTAAGTGTGTAGTGCAGTTGGAGCTGATCCAGACCATAGACAACATGGTCTTCTTCCCTGCAACCAGCAGGAAGGAGGATGCTGAGAACCTGGCTGCTGCGCAGAGAGATGCTCTGGACGCGGCAGACGTCCGTGTCGAGACTCAGGACCAAGGAATGTACCGCTACCTGACCTCAGAACAGCTGTTTAAGTTGCTGGACTGCCTGTTGGAGTCCCACCGCTTCGCCAAGGCCTTCAACTCTAGCAACGAGCAGAGGACCACTCTATGGAAGGCAGGTTTTAAAGGGAAGTCAAAGCCCAATCTGCTGAAGCAGGAGACCAGCAGTCTGGCGTGTGGCCTAAGGATCCTGTTCCGGATGTACTCTGATGACAGCCGTCAGACTGCCTGGGAGGAAGTCCAGAGACAGCTGCTTAATGTGTGCAGTGAGGCAGTAGCCTACTTCCTGACTCTAACATCAGAGAGCCACAGAGAAGCCTGGACCAACCTgctgctcctcttcctcaccaAGGTCCTGAAGATCAGTGACGACAGGtTCAAGGCCCATGCGTCCAGGTACTACCCTCTGCTGTGTGAGATCATGCAGGTTGATCTAATCCCAGAACTGCGGACCGTGCTACGGAAGTTCTACCTACGCATCGGCATCGTGTTCCAGATCGCCCAGCTGCCTGGACCACCtgcagaaccagaaccagagctggaagttgaggtggagaggggggaggtggctggagaggaagcccagtgatGGTGCACGTGTAGCGGGCTGGCTGCGAGACCTCTGACTAGGGAAGCCTGGAGTTCTGGAAGTCCTCCTCCCCTCTTGCCTTGGGTTTGTCTACCAACCCTTTAGGACTATGGTCTCCCATCCCCCAGGGTACTATGAAGGGTGCATCTGACCAGACTTCACCCTTCTGGATTTGGCAGTTACCCAGAATCCACAACTAATGGTACAGGAAACTCCAAGGTGTCTCTACTGTGAACCTGACTGTCATGTGACAGAAAATGCCAACTCCCATACACACTACAtggctaaaagtatgtggacaagtGCTCGTCTAAcatgtcattccaaaatcatgggcatttatatggagttggtcccccctttgctgctataacagcctccactcttctgggaatactttccactaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1442661 lncRNA downstream 3223 15934701 ~ 15935014 (-) True G1262563
TU1442621 lncRNA downstream 40284 15894467 ~ 15897953 (-) True LOC110489693
TU1442615 lncRNA downstream 89052 15848415 ~ 15849185 (-) True G1262521
TU1442529 lncRNA downstream 115053 15821745 ~ 15823184 (-) False LOC110489690
TU1442604 lncRNA downstream 120795 15816037 ~ 15817442 (-) True G1262510
TU1442668 lncRNA upstream 1010 16036291 ~ 16036458 (-) True G1262568
TU1442669 lncRNA upstream 2568 16037849 ~ 16038167 (-) True G1262569
TU1442667 lncRNA upstream 3345 16038626 ~ 16038837 (-) True LOC110490931
TU1442728 lncRNA upstream 7917 16043198 ~ 16043525 (-) True G1262624
TU1442754 lncRNA upstream 50356 16085637 ~ 16085880 (-) True G1262650
XM_021562464.2 mRNA downstream 14432 15918395 ~ 15923805 (-) True LOC110489696
XM_021562463.2 mRNA downstream 33895 15900480 ~ 15904342 (-) True LOC110489694
XM_021562462.2 mRNA downstream 34169 15900480 ~ 15904068 (-) False LOC110489694
XR_002468613.2 mRNA downstream 40227 15894468 ~ 15898010 (-) False LOC110489693
XM_036943866.1 mRNA downstream 93038 15821701 ~ 15845199 (-) False LOC110489690
XM_036943874.1 mRNA upstream 3361 16038642 ~ 16079595 (-) False LOC110490931
XM_021562475.2 mRNA upstream 90087 16125368 ~ 16128696 (-) False LOC110489700
XM_021562474.2 mRNA upstream 90087 16125368 ~ 16128702 (-) True LOC110489700
XM_021562470.2 mRNA upstream 93721 16129002 ~ 16143764 (-) False LOC110489698
XM_036943876.1 mRNA upstream 93721 16129002 ~ 16144495 (-) False LOC110489698
TU1442531 other downstream 93096 15828351 ~ 15845141 (-) True LOC110489690
TU1442597 other downstream 130620 15806250 ~ 15807617 (-) True G1262503
TU1441760 other downstream 432039 15505698 ~ 15506198 (-) True G1261796
TU1441538 other downstream 748421 15189546 ~ 15189816 (-) True G1261602
TU1441452 other downstream 839521 15098040 ~ 15098716 (-) True G1261529
TU1442865 other upstream 240728 16276009 ~ 16276552 (-) True G1262745
TU1443617 other upstream 610363 16645644 ~ 16646417 (-) True G1263444
TU1444458 other upstream 1426547 17461828 ~ 17462977 (-) True G1264199
TU1445577 other upstream 2148510 18183791 ~ 18184123 (-) True G1265249
TU1445798 other upstream 2541258 18576539 ~ 18580163 (-) False G1265456

Expression Profile