RNA id: TU1442665


Basic Information

Item Value
RNA id TU1442665
length 828
RNA type TUCP
GC content 0.54
exon number 6
gene id LOC110490929
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 15938237 ~ 16035283 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCGAATAGAACACATCGGTCTGGAACGGCTGCTGCCCTTTGGGACAGGTACTACTCCTCGCCCCAATTCCGGCGCGCCATGTATGAAGGCAAAAAGacgaaaaacatgtttttaaccaGAGCTTTGGAGAAGATCCTGGCCGACAAAGAGGTTAAAAAGGCTCACCATTCGCAATTGCGAAAAGCCTGCGAGGTGGCACTCGAGGAAATAAAGGAAGATTCTGAAAAATTAAGTCCTCCTCCAGACAGCAAATCAGATTCTAGCACTCTTCCGCCAATCAAATCAAAGACCAGCTTTGTCGAGGCCGACAAGTACTTCCTGCCGTTTGAGTTGGCATGTCAGTCCAAATGTCCCCGCATCGTCATCACATCACTAGACTGTTTACAGAAGCTGATAGCGTACGGCCACCTGACAGGCAGCGGTCCAGACAGCGCAGCCCCGGGCAAGAAGCTCATTGACAGGATCATCGAGACCATCTGCGGCTGCTTCCAGGGACCACAGACAGATGAGGGGGTGCAGCTACAGATCATTAAGgcCCTGTTGACGGCGGTGACCTCACAGCACATAGAGATTCACGAGGGCACGGTGCTGCAGGCGGTCAGGACCTGCTACAACATCTACCTAGCCAGCAAGAACCTCATCAACCAGACCACAGCCAAGGCCACACTCACTCAGATGCTCAACGTCATCTTCGCCCGCATGGAGAACCAGGCACTCCAGGAGGCCaagcagatggagagggagaagcacCGGCAGCACTCCCCAGTCACCCagcaacaggaacaggaacaggactcGCCCCAGCTCCAGCAGCACACCTATCCCACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1442677 lncRNA downstream 25103 15961312 ~ 15964183 (-) True G1262574
TU1442675 lncRNA downstream 32392 15956619 ~ 15956894 (-) True G1262573
TU1442661 lncRNA downstream 54272 15934701 ~ 15935014 (-) True G1262563
TU1442621 lncRNA downstream 91333 15894467 ~ 15897953 (-) True LOC110489693
TU1442615 lncRNA downstream 140101 15848415 ~ 15849185 (-) True G1262521
TU1442668 lncRNA upstream 1169 16036291 ~ 16036458 (-) True G1262568
TU1442669 lncRNA upstream 2727 16037849 ~ 16038167 (-) True G1262569
TU1442667 lncRNA upstream 3504 16038626 ~ 16038837 (-) True LOC110490931
TU1442728 lncRNA upstream 8076 16043198 ~ 16043525 (-) True G1262624
TU1442754 lncRNA upstream 50515 16085637 ~ 16085880 (-) True G1262650
XM_021562464.2 mRNA downstream 65481 15918395 ~ 15923805 (-) True LOC110489696
XM_021562463.2 mRNA downstream 84944 15900480 ~ 15904342 (-) True LOC110489694
XM_021562462.2 mRNA downstream 85218 15900480 ~ 15904068 (-) False LOC110489694
XR_002468613.2 mRNA downstream 91276 15894468 ~ 15898010 (-) False LOC110489693
XM_036943864.1 mRNA downstream 144087 15821701 ~ 15845199 (-) False LOC110489690
XM_036943874.1 mRNA upstream 3520 16038642 ~ 16079595 (-) False LOC110490931
XM_021562475.2 mRNA upstream 90246 16125368 ~ 16128696 (-) False LOC110489700
XM_021562474.2 mRNA upstream 90246 16125368 ~ 16128702 (-) True LOC110489700
XM_021562470.2 mRNA upstream 93880 16129002 ~ 16143764 (-) False LOC110489698
XM_036943876.1 mRNA upstream 93880 16129002 ~ 16144495 (-) False LOC110489698
TU1442531 other downstream 144145 15828351 ~ 15845141 (-) True LOC110489690
TU1442597 other downstream 181669 15806250 ~ 15807617 (-) True G1262503
TU1441760 other downstream 483088 15505698 ~ 15506198 (-) True G1261796
TU1441538 other downstream 799470 15189546 ~ 15189816 (-) True G1261602
TU1441452 other downstream 890570 15098040 ~ 15098716 (-) True G1261529
TU1442865 other upstream 240887 16276009 ~ 16276552 (-) True G1262745
TU1443617 other upstream 610522 16645644 ~ 16646417 (-) True G1263444
TU1444458 other upstream 1426706 17461828 ~ 17462977 (-) True G1264199
TU1445577 other upstream 2148669 18183791 ~ 18184123 (-) True G1265249
TU1445798 other upstream 2541417 18576539 ~ 18580163 (-) False G1265456

Expression Profile