RNA id: XM_021562465.2


Basic Information

Item Value
RNA id XM_021562465.2
length 4497
RNA type mRNA
GC content 0.51
exon number 24
gene id LOC110489697
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 16090496 ~ 16114214 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgaaattatttaacctttatttaactaggcaagtcagtttacaacaaattattatttacaatgacggcccacaccggccaaacctggatgacgctgggccaattgtgtgcggccctatggaactcccaatcactgccggttgtgatacagcctggagagCAAAACACTACGTTTGTGTTCAGTTCCAAGAAGAATACTTGAACGGCAGTTTGTGGACTTCAGTTGTAAATTTGACTGTCGTAAAGAAAATGAAGTGTCCAAAACATGATTGATTGAGTGATTGATTTATAACAATGTAATAACAATGTTGTGAACTCAAGTCAGTGTATTACAGTAACTGATCTTATATATATGACCACTAGAGGGTAGTGTACCTCGAGGTTTAACCTACATACTACCCCCAAAGATTTTGTCTCCTTCAGTGCCGCCCCTCTCGATAACTTCCGCGTCAACTACATTTCTACTTTACTGTTGTTTTGACTTTATGCTTTTGAAGAAATGGTTCAGAAGACCGACGTGACTCTGGAAATGTAGCTACATTTTGCCTTGATATTTAAGTCTATTGGATTCATAAGGACTTGGATCATAAAATACATCTGGAAACCTTGAAGATTAAAagtCTGAATGATGAGTACCCAGTCTGTCCCATTTGAGGAGGTGCGGAGGAGAGCTGAGTCCCTCCTATCCTCCTCAGGCTCTGCACAGGTGGTAAAGGATGATGTCCAGGTCATGGCTAAcatccccctgtccctgtctgacaAGTTTCACCACATCACAGCGCAGACCATGGTGACAGAGAACATCACAGGGCACAGAAGGCAAGAGGTCCTAGATTCTTTGGGTCGGCTGTTTAAAGCCTTGAGTATCCTGGAGAAGTATGGCTGTAACCTGACCAGCCCCAGCAGGCCCAGGTACTGGCGGAGCGTCAAACACAACAACCCAGTTTTCAGGACCACCGTGGACGAAATCAAgGGTGGCAAGTCAGTCCTATTTCTTTACGGTTACACCAATCAGCAGCCAGATGGGCTCAGCTTCCCTGATGATGTCACACATCCAGACGTTGAGAAGGTTGCTGCGGTGACCATCGAGGTCATGATCCTGCGCATGGAAATGGACATGCTCATCAAGGGTACACATGCTCACCCAGAAATGTACAGCAATATCCTCCCAACCCCTAATCTACAGAAGATAACCCAGGATGAACCAGAGATGATGTCTGATGTGGTGGTCATTCCACTAGGAGAGGAGCACGGGGACAGGGGGAAAGACCTTCAGCCGCTATCTCCTCCACCCAAACATGCTACCAGTCCTGGACTAAGACATGTCCCCACCACTCCTACTGaTGGGATGTGTGATTTGTGCGgtgccactccctctctcctctgcccggCCTGTGGGTCTCTTCCTTTCTGTCAGTCATGTGAcctcctctaccaccaccacccgtCCAGAGCCAATCACAGGAGAGATAGAATACAGGAGACCTGTATCCTCTGTGGTGTGTCCCAAGTCTCTGCCCATTGCTCCACCTGTTCTCAGAGGCTGTGTCTGGAGTGTGACAGACTGTACCATTCTCACCCTGACCGCGGGGGTCACAACAGGACAGTGGTTGCCAAACCAAAAAGAGCTTTAAGCCACTCTTTTTCCTTGTGGGAGTGTGCTCAGTGCACTACAGTCAACGAGGTGAAGGCCGTGCTGTGTGTGACCTGTGAACGACCCCGACTTGCCCTCGCTTCCCTTATAGTTCAGGAGGACCCGGGGCAACCGCCATCCAGCGCAGAGTGGCAGTGTAAGAGCTGTACTGTCGTGAACCAGGGCAGCAGTATACTGTGTGAGGTGTGTGAGCGCCCCCGTCTGGCCACCCGTCCCTCTATCACGCCAGTACTCCCCAGTACTCCAGTACTCCCCAGTACTCCAGTACTCTCCATGCAAGGACCCACGTCAGATAACGAAACAGAGTGGATGTGTCAGTTCTGCACCTATGTGAACTCTCAGCCTGTAGTGGTTTGTGAGATGTGCAACTTGCCGTGTAAAGATCCTGCAGGCACCAGCCTCAAGTCCCTCCCCCTGCAGTCTCCAATCAAAGACTTAGCCTCACCTTCTACGCCCCAACTCCATCCCCAGATCCCTCCCAGGGTGAACATCGACATCAAGAGACAGAACCTGATGAGGGATGAAGGGCTGAAACTTGTCCATCAAATACGAgagggagagaaaaatggAGTGGGCCCAGAGGAGGTCTACGCAGCCCTTTGCGTTTCCGGAGGCAGCAACGTCAACCCCTGCGATTGGCTAAAATCAGAGCTGCCCCACCTACTGGATGAGATCTGTGCCATGGCGGCTTCGGCTGCTTTGCAGAACTACAAAGCAGGGGTTTCTGGGCCGCAGGATAACACAGAGCGGGATGGAGGTTCGACAGAGCAGCAGAGTCCCAGTGTGCTGCTGGGTGAGGGGGTGCGGCTGTCCAGGGTTGAGGCCAAGCAGGCATGGCTGGCAGCAGGAGGCGACACTGAGAGAGCAGTCCGTCAGCtgctcagagacagacaggtcaagATGCGCGAGCTGCGTTCTCTGGGTTTCCGGGAGGCGTCCCAGTGTGAGGAGGCTCTGCGTCTGAGTGgaggagaggtgcagggggctctGTCCGTGCTGCAGCGGCCCCTCCTGGAGCCCTTCCACCAGCGCATCTGGAGCGACCAGCCAGTGGCCCCTATCGATGCAAAGAGCCCCgacaaacagCGGATGTGCAGGCGCCTGCTGGCGTTGTACGAGCTGCCCAGCTGGGGGCGCTGTGAGCTGGCCCTGTCTCTACTCCAGGAGCCTGATGCCCAGTACTCCCTGGAGGACGTCATCCAGGCCGTCAAGGAGTCCCAGGACAGGGAGTTCCTCCGCCGCCTCCTCAACAAGGAGTGCCCCTGCTGCCTCAGCATCTTCCCACACAGCAAGATGCAGTCCCTGACCTCGTGTCAGTGCTCGGTGTGCCACGAGTGTTTCACTCAGCACTTCACCATCGCTGTAAGAGACAAACACATCAGAGACATGGTGTGTCCCGTGTGCGCAGGACCAGACATCAACGACCCCGAGCACCTGGACAGCTACTTCTCCACCCTGGACATCCAGCTGCGAGACTGTCTGGATCGTGAGGTGTACGAGCTCTTCCACAAGAAGCTGATGGAACATGCTCTGATGAAGGACCCCATGTtcctgtggtgttgtcactGCACCTTTGGGTTTATCTATGATGGAAACCAGTTCAAAGTCACCTGTCCCACGTGTATGAAGAGCTTTTGCAACCAATGCAAAAAGCCTtgggAAGCTCAGCACCAGGATGTATCCTGTGAGCAGTTCCAGTtgtggaagagagagaatgaccCTGACTACCAGAGACAGGGGCTGGCCGGGTTCCTGCGGGACAACGGcatcaCCTGTCCTCACTGCAGGTTCCAGTATGCCTTGACCAAAGGGGGCTGCATGCACTTCAGCTGCTCTCAATGCAGATACCAGTTCTGCAGCGGCTGCAACAATCCCTTCCACACTACGGCGTGTAAGACAATCCAGTGTAAAATCACAGGTCTCCATGCTCATCACCCACGAGACTGCCTCTTCTACCTCAGGGACTGGGAGCCTGTCAGACTACAGGCCCTGCTGCAGAGGAATGCTGTTGTGTTCAACACAGACCCCCCTAATGGGACACAGACTGACGCATGTGGTGTGATGGAGCAGAAGGATGAGGGAGGTCAGCAGATTGACTCACCCTGTGGAGTCCAAACTCAGCCAGGAGAAGCTGGACTCTGcgataaacactacagagagtACCTGGTTAGTCTCATTAACGGACACACCCTGGATCCCGCTCTTGTCTATGACCAACAAGAGGTGACAGTTGCCTGCAGGAGGTACCAGGTGGAGGAGCAACAAGGGGAGGGGGAGGACGACCGGGTGTACCAGGATCGACTGCTGAAGAAACTGATGGAAGTTCCACTTGGAGAAAGGGTTCCTCGGATGAGATGAAGACTggttaataaaatattttaaatcaTTCTAAGGAAAGTACAGGTATCCTATTTGCAAACAGCATGAAGTGAAGGAGTCAGGTTTCAAACCTCCCACCACATAGCATTACCAACCAACCAACTAACCAACCTGCTATATTACATCTCATTGAAGTTTAACATGTTTTGTTCTTCACATGCTTCATTAGATTTATGACATCTACAGTTACTAGTATCAAAATTCCTCTCTGTAAGGATACAGTTGCAAAGACAGACTGACAAGACAGGCTAAAATCAACTGTTTTTCTTGTTTCTTTTTTATtaaagatataaaatatattttcaatatgtCACTAAACAACTTAAGAAATAATCAGAAGATGTTTGTCAACTTAAACATGACAGTCTATATTGTGAGATATTTTCAAAGTGTAATAAATGCATGTTATACCATGTAATAAATAGGCTACTCATGCAATAAAGTATTTTATTGATTTGAAAATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1442227 lncRNA upstream 2978 16087280 ~ 16087518 (+) True G1262197
TU1442226 lncRNA upstream 3225 16087060 ~ 16087271 (+) True G1262196
TU1442224 lncRNA upstream 4930 16085351 ~ 16085566 (+) True G1262194
TU1442221 lncRNA upstream 9004 16081050 ~ 16081492 (+) True G1262191
TU1442220 lncRNA upstream 9609 16080646 ~ 16080887 (+) True G1262190
TU1442232 lncRNA downstream 1502 16115716 ~ 16115924 (+) True G1262202
TU1442242 lncRNA downstream 5158 16119372 ~ 16119688 (+) True G1262210
TU1442289 lncRNA downstream 88403 16202617 ~ 16202829 (+) True G1262253
TU1442293 lncRNA downstream 108147 16222361 ~ 16222642 (+) True G1262257
TU1442312 lncRNA downstream 143020 16257234 ~ 16257618 (+) True G1262275
XM_021562461.2 mRNA upstream 194960 15885437 ~ 15895536 (+) False mcmdc2
XM_036943867.1 mRNA upstream 205130 15848900 ~ 15885366 (+) False LOC110489691
XM_036943869.1 mRNA upstream 205130 15848900 ~ 15885366 (+) False LOC110489691
XM_036943868.1 mRNA upstream 205130 15848902 ~ 15885366 (+) True LOC110489691
XM_021562458.2 mRNA upstream 271199 15815443 ~ 15819297 (+) True LOC110489689
XM_021562473.2 mRNA downstream 6131 16120345 ~ 16125640 (+) False LOC110489699
XM_021562471.2 mRNA downstream 6132 16120346 ~ 16125640 (+) False LOC110489699
XM_021562472.2 mRNA downstream 6132 16120346 ~ 16125640 (+) True LOC110489699
XM_021564273.2 mRNA downstream 69908 16184122 ~ 16187739 (+) True LOC110490826
XM_036943879.1 mRNA downstream 115612 16229826 ~ 16311786 (+) False LOC110489703
TU1442095 other upstream 196332 15892968 ~ 15894164 (+) False mcmdc2
TU1441984 other upstream 354079 15735930 ~ 15736417 (+) True G1261980
TU1441924 other upstream 383957 15696925 ~ 15706539 (+) False LOC110489686
TU1441927 other upstream 386222 15696925 ~ 15704274 (+) False LOC110489686
TU1440825 other upstream 895551 15193012 ~ 15194945 (+) False LOC110489660
TU1446004 other downstream 2745897 18860111 ~ 18862511 (+) True LOC110489737
TU1446540 other downstream 3559899 19674113 ~ 19680105 (+) True epb41l3a
TU1448574 other downstream 4726081 20840295 ~ 20841398 (+) True G1267949
TU1449889 other downstream 5672007 21786221 ~ 21794253 (+) False slc12a7b
TU1451171 other downstream 7018645 23132859 ~ 23136721 (+) True LOC110489812

Expression Profile