RNA id: XM_021562468.2


Basic Information

Item Value
RNA id XM_021562468.2
length 2480
RNA type mRNA
GC content 0.48
exon number 12
gene id LOC110489698
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 16129002 ~ 16144964 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGACAGCATTTTACATTCACGAACCATGTCACACAGGCCGTTCTAAAACTACTCACAAGCCgctaaccttaaataacctagTTCAGTCGTGTTACagcattagctagctatctaacaacCTGAAAGTTATCATATTTGTGGGAACTTTACCAGTAATAGGCCAACATTTGGTGTCACCGAAATAAATGAAAAGTGAGAGCTTATTCAGACCATTTCGTGGACTATCAGCGGAACATTTTTGTGAGCTCCAGAAACCCAACATGACTGAAAATGGACTTGGGCACCGGGAGAGGGTGCTTAACGTGGACACCATGAACCCGAATGTAAAGCGGATTGAGTATGCTGTCCGTGGTCCAGTTGTGCAACGTGCAGTGCAGATCGAAAAAGAGCTTAAAGAGGGAGTTAAGAAGTCCTTCACTGAGGTCATTAAAGCCAACATAGGTGATGCACATGCCATGGGCCAGAAACCAATCACATTTTTCAGACAGGTTATAGCGCTGTGCGTGTACCCGGATCTCCTAGAAGACAAGTTTCCAGAGGACGCTAAAAACCGAGCACGGCGCATCCTTCAGGCCTGTGGAGGGGGTAGTTTAGGTGCATACAGTGCTAGTTCAGGCATTGAGGTCATACGACAAGATGTTGCTAAATACATTGAGAAGCGGGACAGTGGAATTCCCAGTAACCCTGACGACATCTACCTCTCTACTGGGGCCAGTGATGCTATAGTGACCATGCTGAAGTTGTTGACCGCAGGCGAAGGGAAGACCCGTACAGGGGTGATGATCCCCATCCCTCAGTACCCCCTCTACTCTGCTGCTCTGGCTGAGCTGGCGGCTGTCCAGATCAGCTACTACCTGGACGAGGACAAGTGCTGGAGCCTGGACGTTGGTGAGCTGAGGAGGGCTGTGAAGGCAGCCAGGGAGCACTGTAACCCCCGCGCCCTCTGCATTATCAACCCTGGCAACCCCACAGGTCAAGTCCAGAACAGGCAGTGCATTGAAGATGTGATCCGATTCGCTGCTGAGGAGCACCTTTTCCTGATGGCTGATGAGGTTTACCAGGATAATGTGTACATGGAGGGTTGCCAGTTCCACTCCTTTAAGAAGGTTCTATTTGAGATGGGACCAGAGTACTCCAGTGTTGTGGAGCTGGCCTCCTTCCATTCCACCTCCAAATGCTACATGGGAGAGTGTGGTTTCAGGGGAGGATACATGGAGGTGATTAACATGGACCCTGAGGTGAAGTTGCACCTGACTAAGCTGGTGTCTGTGCGGCTGTGCCCCTCCATCCCTGGGCAGGCCCTACTGGACCTGGTAGTCAACCCCCCCCAGCCTGACGAACCTTCCTACGCCACCTTCATCAAGGAGCGTACTGCCAACCTGCATATCCTGTCTGAGAAGGCCAAGATGACAGAGCAAGTCCTCAACACGGTCCCAGGGATCCACTGTAACCCTGTCCAGGGAGCCATGTACACCTTCCCCCGCCTCACACTGCCAGAAAAAGCCATCAACGCGGCCAAgGAACAGGAACAGGCTCCAGACATGTTCTACTGTATGAAACTGCTGGAGGAGATGGGCATCTGTCTGGTCCCAGGGAGTGGCTTTGGACAGAGGGATGGAACCTACCACTTCAGGATGACCATCTTGCCTGCAACTGAAAAGCTGAAGATCGTTTTAGAAAAGATCAGGGAGTTTCATAAGCGGTTCACAGAGGAGTTCTCATAACCCTAAAATCCTCCCCCAGATTGCAGTCTGTTTCAGAAAACCACCCATCCTCTTCAGAAAATGGATTGAATAGCCAACAAAGGGTGCCAGTGAGTTACCAAGTGTCGTTGTGTGGCTGGAACTGGAACAGTCACCACAACACACCTTGTGTTGGAATATCTCCCCTCAATGCTCGAGTTGACATTGCAAGGGTAGCACTGTTAAAAAAACAGAACTATTTAACATGGTGCCTGCTATTCTGTTTTAGCTAATTGTTTTTAATTGTGTCAGATAGCATCTGCACagtggctggtggcaccttaattggagagaacaggctcatagtaatggctggaacagaatgtatggaatggtatcaaacacatggtttccattattatgagctgttctcccctcaccagcctcctttgcaatgtgtgtgtatttatgtgatgACTGAAAACAGATATCAGCtcatgactttttttttttttcagttaaGAGTTTACTTGTCCTGCCAAGTATTTTACAGGTCATATAGCAGCACTGGTCCAAACTAGTCCAAATATCACTAAATGGGTGGTGGAGGTGTGCTTCTATTGCACGACAGGAGTGCAATGGATATTGTGTTGAAAAGGGTGCTGGGTTGAAAAGAGTACTGTGTCCAATGAACAGTCTgactgtagctacagtattattattttttagtgACTGTTGATTGTATCTAGAAttgtataaataaaataaatatttgtcTACTGTATTGGTAGTTGAAA

Function

GO: NA

KEGG:

id description
K00814 GPT, ALT; alanine transaminase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1442754 lncRNA downstream 43122 16085637 ~ 16085880 (-) True G1262650
TU1442728 lncRNA downstream 85477 16043198 ~ 16043525 (-) True G1262624
TU1442667 lncRNA downstream 90165 16038626 ~ 16038837 (-) True LOC110490931
TU1442669 lncRNA downstream 90835 16037849 ~ 16038167 (-) True G1262569
TU1442668 lncRNA downstream 92544 16036291 ~ 16036458 (-) True G1262568
TU1442802 lncRNA upstream 55566 16200530 ~ 16200789 (-) True G1262694
TU1442805 lncRNA upstream 57669 16202633 ~ 16202844 (-) True G1262697
TU1442807 lncRNA upstream 75515 16220479 ~ 16220739 (-) True G1262699
TU1442820 lncRNA upstream 85012 16229976 ~ 16230271 (-) False G1262708
TU1442821 lncRNA upstream 85012 16229976 ~ 16230355 (-) False G1262708
XM_021562474.2 mRNA downstream 300 16125368 ~ 16128702 (-) True LOC110489700
XM_021562475.2 mRNA downstream 306 16125368 ~ 16128696 (-) False LOC110489700
XM_036943874.1 mRNA downstream 49407 16038642 ~ 16079595 (-) False LOC110490931
XM_036943870.1 mRNA downstream 93719 15938237 ~ 16035283 (-) False LOC110490929
XM_036943877.1 mRNA upstream 16390 16161354 ~ 16168163 (-) False LOC110489701
XM_021562477.2 mRNA upstream 16390 16161354 ~ 16177141 (-) True LOC110489701
XM_021562478.2 mRNA upstream 61828 16206792 ~ 16219088 (-) False shrprbck1r
XM_036943878.1 mRNA upstream 61828 16206792 ~ 16219467 (-) True shrprbck1r
XM_036943883.1 mRNA upstream 173935 16318899 ~ 16324594 (-) False LOC110489704
TU1442665 other downstream 93880 15989286 ~ 16035122 (-) True LOC110490929
TU1442531 other downstream 283861 15828351 ~ 15845141 (-) True LOC110489690
TU1442597 other downstream 321385 15806250 ~ 15807617 (-) True G1262503
TU1441760 other downstream 622804 15505698 ~ 15506198 (-) True G1261796
TU1441538 other downstream 939186 15189546 ~ 15189816 (-) True G1261602
TU1442865 other upstream 131045 16276009 ~ 16276552 (-) True G1262745
TU1443617 other upstream 500680 16645644 ~ 16646417 (-) True G1263444
TU1444458 other upstream 1316864 17461828 ~ 17462977 (-) True G1264199
TU1445577 other upstream 2038827 18183791 ~ 18184123 (-) True G1265249
TU1445798 other upstream 2431575 18576539 ~ 18580163 (-) False G1265456

Expression Profile