RNA id: XM_021562490.2


Basic Information

Item Value
RNA id XM_021562490.2
length 5086
RNA type mRNA
GC content 0.47
exon number 6
gene id LOC110489710
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 16667887 ~ 16680822 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCAATTGCCAATGTTGGTGATCACATGCCCACTGGAGCTGGTTCTTCTTATTTTTAGCTGATAGGTGTGGAACCCgatgtggtcgtctgctgcaatagcccatctatGACAAGGATCGACAAGTTTTGCATTCCgagatgccattctgcacaccGCTGTTGTACTGCAcctttatttgtctgtttgtgtccCACCTggtagcttgcacgattcttgccattctccttcgacctctctcatcaactagctATTTTCGGCTACGGGACTGCCTCTGACTGGAGGTTTTTTGTATGTCGCaacattctcggtaaaccctagacactgtcgtgcgtgaaaaaCCCTGGAGGGCgtccgtttctgagatactggcaACTACGATCATACCACACTCAAAGTCGATTAGGTCACTCGTCTTTATCCCATTATAACGTTTaattgaacagtaactgaatgcctcgatgcctgtttGCCTGCTTTTTATAGCATGCCATGGCCACTTGACTCACTGCCTGTAGGAGTGTTCAATTTTTGTGAAtgtggtggtgtacctaataaactgtctggTGAATGTATGTTATATGCATAACATATTATGTTTGTCAGACTGATAGTTGTTTGAGTAGGACACAAAGTATTCTCTCTTGGGTTCAGATATAGTACCGTATGCTCCCCTGTTTGTGTTGAGGCTTGTGTGTGACCCTGCGGTAATTGCAACGGCTGACAATGGAATCGTTTTGGAAGTAGACGTCTGGCATGTGCAGATATCTATGGTTTCAATACATGGCATTTCCTGTCAACTTAGGGGTAACTAGCATACTAGCTAGcaaggagctaacatggctgcgcGACTGTTCATGATAGATAGCTAACCTCAAAGTAAACTaaacagagccataagaaaattaTAGGTTAAATGACAGAACAATGCATAGCTAGCAGCAACGGGTGCGTTCATGCTAATGTGTCGTGAGTTTATAAGCTAACATGGACCTTGGATCAATGCTGTACAACAATTTGAAAGATGTATCATGGAGCACGACGTCTTTACCCTTAGATCGACTTGTCAGTGTTTATAGACTGCCGCAAATTGTCAAATTGGACAGTGGTGAGTTGGTGGACGGCTTACGAGACCATGACTACCTCTTGATTCATTCCTGTCGGCAATGGACAACAATCACTGCACACAGTCTGGAGGAGGGCCATTATGTCATTGGACCCAAAATAGAGATCCCAGTGCATTATGAAGGTCAGTTTAAGCTTCTGGAGCAGGACAGAGATGTCAAGGAGCCGGTGCAGTACTTCAACAGCGTGGAGGAGGTGGCCAAGGCATTTCCCGAACGGGTTTATGTCATGGAGGAAATTACGTTCAATGTGAAGATGGCTTCAGGTGAATGCAACGAGGACACGGAGGTGTACAACATCACACTAAGCACCGGTGATGAGCTCACCCTCATGGGCCAGGCAGAGATCCTCTACGCCAAGGCGTCCAAGGAGAAGTCACGCTTCAACACAATCTTCAAGAAGATCAGCAAACTCAACTCCATCAGCAAGATGGCAAACCGTGGCAAGATGCCCTGCCTCATCTGCATGAACCACCGGACCAACGAGAGTGTCAGCCTGCCCTTCCAGTGTAAGGGCCGCTTCAGCACCTGCAGCCCGCTAGAGCTCCAGATGCAGGAGGGCGAGCACACCATCCGTGACATCGTGGAGAAGACCCGTCTGCCCGTCAACGTCACTGTGCCTGGCAGCCCGCCGCGCAACCAGCACGACCTGCACCTGATCCGCGAGGGCCACCGCTACAAGTTTGTCAACATCCAGACCAAAACGGTGGTGGTGGGCTGCGTGCTGCGCAGTAACAAGATCCTCCCTGTCCACTTCCCGCTCCACATGGCCTCCATGCCCAAGTTCATCATCCCTGAAGGACTGCTGCAAAGTGAGCTGTGGCTGGACACCATGGTGCACCGCTGGTTCACCTTTTGCCAGGAGCAGTTTGACATTGATGACTATTCCCGTGCTGTGCGCGATGTCAGGACCGACTGGAACGACGTCGACGGGAAGAGCCCCAAGAAGAGCAGTGGGAGCGGTAGTAGCAACAGCAATGGCTGCCCCTCCCACATGCACGTGCCCAGCTCTCTCACGTACGCCCGCGACGAGCTTACCCAGTCATTCCACCGACTGTCTGTGTGCGTCTACGGCAACAATCTACACAGCAACAGCGAGGTCAACCTGCAGGGCTTCATGACGCTGTGTGGGGACTGGGCGCTCCTGCCGCCCGAGGGCGTGCCGGTTGACTCGGTCGACACAGAGTACCTCTTACCTGAGCTGCTGGAGAACATGAGCCAGTCCGTCCTTAAGTCGGATGTGCCCTACGAGGAGCTGTGGCTGGACCACTTGAGATCAAGTCGGGGAGGAGGGCACAGTGTTGGCGGCGAGGACCCGAGAAGCACCAGCAACACGATCTGCACCTCCATGGCGGTCCTATCGTACCCTGTCTCCTCCAGTCATGTGGGCCCAATGATCAGCTCTGAAATCTGTCTACCTCCGCCCCCAGTCCCTCCAAAGTCCGATGCTGTGAAGGAAGAATGTCGTCTATTGAACGCCCCTCCCATTCCCCCCCGAAGTTCCAAGCAGATGATGTCCACCCCAACGATGTCCACCACAACGCCGGCTGGAGCTAAGGCGCGGCAGGCGGAAACGCGCTCTCCAAGCCCTACTCTCTCCTACTACGCCTCAGGCCTACACAGCATCAGTGGAGGAGAGAATGAAGTGACCGAGGCGGAGGAGCAGAACCACGTGTGTTACCCCTGTAACTGGGTCAAGACCAACGAGGACAGCCCGACAACGTCTCACGTGAGCCCACCGTTCGACAGCGTCCCTTCTAGACTATCGTGGCCCAACGACTTCTGTGGACAGGCTTCTCAAGGCATGGAGGAGTTCCTGCCCATCCACTGTCAAAGTTACTACAGCTATCCCCGAAAAAGACCCCTGGGCACGCCTAAGTCGCCATGCACTTCCAGCCTTTTTGACTTTGACGGAAGAGAGCAGAGCAGTAACGCCGTCCCCTTCAAAGCCTCGTACACTAATCAGTTTTGCACCAAGTCGTCGAGCTACACCCTGGAAATGTACAGAGATAATACTATTGAAGAATGTAACACTAAACAAAGCCTGTCGTGCCCCATCTTGCCCCCGAGGACCCCCAAATCAAACGAGACAAGTAAAGGTACAGATGCAGTCAAAGGTACGGAGCAGGACACTCTAAAGTGCCTGGTCAGCCAACAACACGATCAGGTCACAACGACAGACATATTCTCTATTTCCTATCCGCCCCTCCCCCCACCGTCACTATCCTCCCTCTCTGCACCAGCCCCCGAAGGACCTTGGCAACCACCCACCAACCTATCTGGACTCTCCATCGAAGAGGTGTCCAAATCGCTACGGTTCATTGGCCTCTCCGACGACATTGTGTCTTTGTTCGTCACGGAGAAAATCGATGGAAATCTTCTGCTGCAGCTTACGGAAGAGATTCTGTCGGAGGACTTCAAGTTAAGCAAACTCCAAGTGAAGAAACTTATGCAGTTTATTAACGGTTGGAGGCCTAAAATATAACCTAACCCTTTAACAAAAGTACTAGtctaggaagaaaaaaaaacatgcaatGTGCTGTGAATGCCGGCGTAAACTTTTGCCTTCAGTTTTGTACTCTGGAGGTTGTTTCATAGCATGAGTTGGCCAGACGATTTTCCTCAACATTCTGAAACAACTCTGCATATTCTAGTTCTTCGAGAAAGATAACACTTGAATTGGGCATGGTATATAACTGACTATATAATCTCTCTCAATAACCCATAGTCCACTTTAAGCTTTCTTGTGGAACCAGAAAACCAAGAGTAATCTCAGTGTATCTGGAAGTTGGCTGCTTAACTTGTTGATCCAGCTCTCCGAAGTCCAACCCTGGTAACCATTACAGTTGTCTAACTATGTCACAGGGATGTGTTGTGTATTAACTCTTGTCATGTTCTATTATGTTTGATTTCCTCTTTGTCCTCTTTAGGGACATTTTCCCTCAACTCTGTTACTACCTGCTTTAACCCAAAGCCCTTCCACAGAAGTAATTGGAGGTTATTAATGAAAGTTTGCGATAGCAGGCACAGCTGCTAAATCCAAGCGATGGCATTTAACTCATAACAGTGTGCACTTGTTGCCTTATTATAATACTGACTTAATATGCAAGTAACAACAACCAATACAATGTAACTTCAGATTCTGCAAGATGCACttgtcaaaaaaaaaaagactttaCCAGGTCAAATGGACTGTACAATCAACTCATGATATTGTGAAAAACCACAAAGTTTTTTAGCAACGTTGACTTTACGTGTAATAGCTAAAGAAGGGGAAGCTTTGGGGATCAAGAAGGAACTATGTACCATTACAGAAGGAACATGTATTTGACTAAATGAAATGGAGAAATTGTTATATAGACTGCAAGGATATGTTACATTGAAAATATTGAATTACTGAAATAGCTATTGATTAATTTGATATAAACTGAACTAACAATATTTTCCCTTTTTATTGTGCACATTCACAAATACAGACTTTCTCAAACTTGAAACAGACCAGACTAATCTGCCTTAATTTAACCCACCACAGAACTTTAACTAAACTAAATTTAGCTTGGGGCCGTTCAAGAGGGTGCTGCATTATGGAACgttcagatagatagatagatatatatgtaTTCTATAGCACAGATGATTGTCATGTATAGAAAAGAGAATCATGTTGCCTCTATTCATTACATGTATATCTGCTATGTTCTGAATGTTTCACCTCACTGAATACACCTCAGGTGTAATTTTTCCTTTGTGTTTTTGTGTCATGAATTAGTGTAATGTTATGCAAGTGATAAAAGGGTGGTAAGTAATTGTAACTGTAAAATGACCAGTAGCACAGGACTAAACTGTAAAATGCTCATCGACAAACTCTGTTGTCATGGAAAAACTGACATTGTTTATGAACAACCCCTATTATATTTTGACTTAACTTTCTATGGTTGTGTATGATCAATAAAAATGGACACATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1443638 lncRNA downstream 1859 16665793 ~ 16666028 (-) True G1263458
TU1443636 lncRNA downstream 6647 16661025 ~ 16661240 (-) True G1263456
TU1443606 lncRNA downstream 32047 16635511 ~ 16635840 (-) True G1263436
TU1443602 lncRNA downstream 36133 16629302 ~ 16631754 (-) False G1263432
TU1443599 lncRNA downstream 36133 16629907 ~ 16631754 (-) False G1263432
TU1443645 lncRNA upstream 15911 16693875 ~ 16740357 (-) True G1263464
TU1443759 lncRNA upstream 197814 16875778 ~ 16908888 (-) True G1263575
TU1444330 lncRNA upstream 523190 17201154 ~ 17202348 (-) True G1264090
TU1444396 lncRNA upstream 674944 17352908 ~ 17353122 (-) True G1264153
TU1444397 lncRNA upstream 675708 17353672 ~ 17353939 (-) True G1264154
XR_005036054.1 mRNA downstream 50145 16612500 ~ 16617742 (-) False LOC118938791
XM_021562200.2 mRNA downstream 207818 16448445 ~ 16460069 (-) False hus1
NM_001160574.1 mRNA downstream 207826 16448449 ~ 16460061 (-) True hus1
XM_036943903.1 mRNA downstream 227970 16328945 ~ 16439917 (-) False LOC110489705
XM_021562483.2 mRNA downstream 228046 16328945 ~ 16439841 (-) False LOC110489705
XM_021562492.2 mRNA upstream 8677 16686641 ~ 16690526 (-) True dph2
XM_021564274.2 mRNA upstream 17584 16695548 ~ 16703091 (-) True LOC110490827
XM_021562500.2 mRNA upstream 42103 16720067 ~ 16854056 (-) False LOC110489714
XM_021562495.2 mRNA upstream 42103 16720067 ~ 16926750 (-) False LOC110489714
XM_021562498.2 mRNA upstream 42103 16720067 ~ 16948438 (-) False LOC110489714
TU1443617 other downstream 21470 16645644 ~ 16646417 (-) True G1263444
TU1442865 other downstream 391335 16276009 ~ 16276552 (-) True G1262745
TU1442665 other downstream 632765 15989286 ~ 16035122 (-) True LOC110490929
TU1442531 other downstream 822746 15828351 ~ 15845141 (-) True LOC110489690
TU1442597 other downstream 860270 15806250 ~ 15807617 (-) True G1262503
TU1444458 other upstream 783864 17461828 ~ 17462977 (-) True G1264199
TU1445577 other upstream 1505827 18183791 ~ 18184123 (-) True G1265249
TU1445798 other upstream 1898575 18576539 ~ 18580163 (-) False G1265456
TU1445796 other upstream 1898754 18576718 ~ 18579791 (-) False G1265456
TU1445799 other upstream 1898754 18576718 ~ 18580163 (-) True G1265456

Expression Profile