RNA id: XM_021562496.2


Basic Information

Item Value
RNA id XM_021562496.2
length 4946
RNA type mRNA
GC content 0.47
exon number 27
gene id LOC110489714
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 16720067 ~ 17062892 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTAGAATGGAAAAGCAAAGACTGTAGCATTTCCCAGCCCATGCTTTACTTTCAACCCAAGGCTGGAGTCAGCACAACGTCCATGCTTCATTCTTCGACGACATTTTCATTTAACGGTCACATAggttactttattttattttatagcgCCTGTCATGCTCTTCAGGTGCGGACCTGCTCTGATATCCAAGGCATCGAAGTTTGTTTGTGATATCATTTCGTCGAATAAAGTAGATTATATAAATAATTCCAGCTCAACAAAGATACATTTATTAAAGGGCTCCGTATATGTATATGAAGCTTTCTTGTGGTTTTCGTTATATTTGCTTTCTTGACATTGGAGTTTATTTCCAGCGAGAGAGTTCGAGGGAGCTTTTGCCGCCAAATAGACGCTCGAGCTGTTTGCAACAACTGTTTAGTATACACTCCCGTAGATGTTGTGGAACACATTGGGTGAAACTTTGTCTCTGAAAATAGATAGCCGACTACTAGGCTATACCGAAAACGTTTTCAAACCAAGAAGACGCCAGCTTATGGAGAACAACTACAGCGGTCAAGTAGGCTATATCCAGGAGTTTTAATTGTCAACCATGAATCAAACAGCAGGAGTAACACAGACATACCGGAGGTGTTCAAAAGCAGGGAACGAGCTGGTGGGGAGTAACCCTCCTCAGAGGAACTGGAAGGGAATTGCGATTGCCCTGTTGGTCATTCTGGTCATCTGCTCCCTGATCGTCACCTCAGTCATCCTGCTGACACCAGGCGAGGATGACAGCTTGGCCCTCAAGGGGAAACTGACCGTGGGGGACATCTTCAGGAAGAACTTCAAGGTTCACGACCCTGAGGCCAAGTGGATCAACAGTAATGAGCTACTCTATCGCACACGTGAGGGGGATGTTGTCAGGTTCAACATGGAGACATACGAGAGGACGGTATTGGTGCACAACAAAAAGTTTGAAATGTACAAAGCCAGCAAGTATGAAGTGTCTCCTGACATGAAGCATGTGCTACTCGCCTACAACATGGCACCAGTGTACCAGCACTCGTTCACTGCCTTCTACATCATCTGCAGCCTGGAGACTCCGGAGACATGGAACCTGAACCCTCCAGAGGTGCGGAACGCCCAACTGCAGTACGCAGGCTGGGGACCCACGGGCCAGCAGCTGATTTTCATTTTTGAGAATAACATCTACTACCGTTCGACGGTGGAGAGCCGATCGATCCGCCTAGTCTCCACCGGCAAGGAGGGAGTCATCTTCAATGGGCTCAGCGATTGGCTGTATGAAGAGGAGATCTTCCAGACCCATATTGCCCACTGGTGGTCTCCGGACGGTGCCCGGCTGGCATATGCCACCATCAACGACACCATGGTGCCCAAGATGGAGATCCCCATGTTCACAGGAACTACTTACCCTACTGGGAGGGAGTACCACTACCCTAAGGCTGGGGAGGAGAACCCAGTCATCTCTCTGTATGTGGTCAACCTGAATGGGCCCCTGCACACCATGGAGATGAGGAGGCCTGAGGACCAGAGGATGGGAGAGTACTATGTCACCATGGTGAAATGGGCGACTACCACCAAACTGGCAGTGAACTGGTTAAACAGAGCCCAGAACATATCCATGCTGACTCTGTGTCAGGCCACCACTGGCGTCTGCACcaagAAACACGAGGACGAGAGCGAAAGTTGGCTACACAGGCAGAATGAGGAGCCGCTGTTCTCCAAAGATGGTCTGAAGTTGTTCTTCACCAGAGCCATCCCACAGGGAGGCAGgggcaagttcttccacatctcCATGTCCATCACACAGcccaacaccaGCACAGACACGCTGCAGTCAATCACGTCTGGAGACTGGGATGTCACCCAGGTCCTAGCCTACAACGAGGACAGCCAGCTAATATACTTCTTGAGTACTGAGGATGATCCGAAGCGAAGGCACCTCTACAGTGCGGACACGGTGGGCCCCTTCAACAGACGCTGTCTCTCCTGTGACTTCTACGAAAGCTGTGGCTACGTCAAAGGCTCCTTCAGCCACAACATGAGCCTCTTCCTCCTCAGCTGCAAAGGCCCTGATGTCCCGTTTGTAGCCGTGTACAgcacacaggacagacagaAGGTGTTTGACCTGGAGACCAATGAGAATCTGAGGATTAGGCTGGACTCCATGCAGATGCCCCACGTGGAATACAAGGAGATCACCATGGAGGATTACACACTAACGATGCAGATCCTCAAACCTGCCAGCTTTGTGGACTCATCTCACTATCCTCTGCTCCTCCTcgtTGACAGCACCCCTGGTGGTCAGATGGTATCAGAGCTGTTCCAAATGGACTGGGCCACGGTGTTGGTGAGCAGCTTCGGGGCCATGGTGTTACGCTTCGACGGGCGGGGCAGCGGCTTCCAGGGGACCAACCTGCTGCACCGCGTCCAGAGGAAGCTGGGCGTGTTCGAGGAGAGGGACCAGCTGGAGGCCCTCAGtatAATATCTAAAGAGCCCTACGTTGACAAGACCAGGATTGGAGCTTTCGGCAAAgttTATGGAGGCTATGTGACCAGCCTGTTACTCAGCGCCGAGGATTCCCCGGTGAAATGTGGTGTAGCCCTCTCACCCATCACAGACTTTGACCTATacgCATCAGCTTTTTCAGAGAGATACCTGGGAATGCCCAAGCCTGACCCAAGAGCATATGCGATGGCAAATCTAGCACACAGGGCATCACAGTTCCTAGACAAGAAGTTTCTGATTGTTCATCCAACAGCAGATGAAAAAGTACATTTCCAGCACACAGCTAAATTCATCTCCCAGCTGATCAATGAAAAAGCAAACTACACTCTGCAGATCTACCCAGACGAGGGCCATTTCATCCACAGCGAGGCCACGCAGCAGCACCTCAGCCAGTCACTGGTCAACTTCTTCGAGGAGTGTTTCCGGCTACCGGAGAAGGTGTtcgaggagagacaggaggaggagattgAGGAAGAGGGTTAGCCCAGACAAAACCAACCCCCCAAAACAGAGCTCCAGTCTACGCCTAAGCACAATTCCAGCCCCCATACTTGGTTTCACAATCCACATAATATGCAACCTTCTCTTGGTTTCAACCCTCTTTAgttctttttttttcaattttcaccttcTGTGTTTCCCCTGCTTTTCCACATGATCAACCCTGAGACTGCCGCGTTGCAGATCAACCCTGAGACTGCCGCGTTGCAGATCAACCCTGAGACTGCCGCGTTGCAGATCAACCCTGAGACTGCCGCGTTGCAGATCAACCAATCTCCTCATCCTCagtttttctcctcctctccctcacctttTGATTCAGCACGACTCCACAAGAGACTATCGGCAGCCATTTTTTTGACATCGACACAATTAATACATTACGATGAAGGACCACTAGCTGATGTCATATCTGGAGCGTGTTGAAAAGGCGGTTGTGCCAGGAATAGGCATTCTCTGGTCATTTTATGTTTAAAAGGACAAGCTCCTTGGATTCCAAACAACTGGTGGGAGGGAAGGAACATCAAAATCCACACCCAAGCTTTACCAGTCAGTGAGGAAGGAAGACTCTATAGCACAAACTTTACCAGTCAGTGAGGAGGGAAGACTCTATAGCACAAACTTTACCAGTCAGTGAGGAGGGGAGACTCTATAGCACAAACTTTACCAGTCAGTGAGGAGGGGAGACTTAATAGCACAAACTTGTGGTCGAAGATACAGACTCCACATGGTATCTGACGGGTCAAACTGGCTCCAGCCCAGTGTCTGGGATGTGGGTGTCTGTGGGGAAGGGAATGCTCCTATTTTGAAAATCGTGAAGAGACCTTTTCATGTCGGACTGTGcttgtgtctgttgtccctttgTCAAGTAGCACATTAAACATTCCCTTCTTTGGACATCGATACTTTGTTTTTTCAGTGTTCAAGTTTATCTTGGAATCTTCTTGTAGCCTCAAGTATGTATTTAAATGGTGTAGTCTTCATTTTTCCATGTCATGAAAAGGATGTAAACCGAATCAGGTTTGTTCTTGATTCACTTTGTCTTGGTTTTGTTGCAAATCGTTCTCCTCCAGTCATTTGAAATTCAAAGCATAATATATTTTAGTCACTGTGCCTTACTTTGGGAGCAAGCGGTCCTTTTTATGGACTCCTTTTgtcaaaacaaaaaacaacatgGATCATTGCAAAGAAATGTTCTGTTGACCATGGCACCAACTACTGATGGTTAAACCTTCACTCTGAACTTTGAACACTTTGTAATGTTGTCATAGAGTATGTATGGAATTATGTCAAGTAAGAAATGGTCTTCTCTAGTTCCAAATATAACCAATTTCCAAAATGGTTGTAAACAGTAGTAGTTGCATGTATCCTTACATTATTTTGCAGATGTTGAAATGGTAATGAAATTGTTTGTCTGGCTAACGACCACATAAAATGGTTATGTTTTAGTAAATGTTGTGGCATTCCAACCCCTCTCAGTATTACAATTCAAACCCATGGGTGGGTTTGAGGTGCCACTTTAAAATTGGTGGTGTTGTATGGCcaaaagtagtagtagtacattTGTGTATATAAGGTCATTAATAGCTTAGAATCATTATCACAATCTttacactatgaaatacaaaggAATTCTAAAAATTTGAATTCTTGAGGCACGAGTCTGCATTTTTTATGTCATTTTATGTGAATGCTCATTCCTGTTACTTTGTCAATGCATGTTATCAAGTTATTTGCAACTCAATGCGATCTTCGATAGCTCCATTTCAAAGTAGTATTTTTGACATCTTGAATGTTCCATACTGGCATTACATTTACAGTAGTATCGTGATTGAGATCCCAGTCTCGTCAGCTTGATGTGTAAATGTTACTCAAATGTCATTTTAGTCTCTTAATATCTGAGTGTTATTTGTGCATAAAtgcattttgaaagtta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1443640 lncRNA downstream 41966 16677900 ~ 16678101 (-) True LOC110489710
TU1443631 lncRNA downstream 42927 16676594 ~ 16677140 (-) False LOC110489710
TU1443638 lncRNA downstream 54039 16665793 ~ 16666028 (-) True G1263458
TU1443636 lncRNA downstream 58827 16661025 ~ 16661240 (-) True G1263456
TU1443606 lncRNA downstream 84227 16635511 ~ 16635840 (-) True G1263436
TU1444330 lncRNA upstream 138262 17201154 ~ 17202348 (-) True G1264090
TU1444396 lncRNA upstream 290016 17352908 ~ 17353122 (-) True G1264153
TU1444397 lncRNA upstream 290780 17353672 ~ 17353939 (-) True G1264154
TU1444399 lncRNA upstream 293429 17356321 ~ 17356567 (-) True G1264156
TU1444400 lncRNA upstream 293695 17356587 ~ 17356819 (-) True G1264157
XM_021564274.2 mRNA downstream 16976 16695548 ~ 16703091 (-) True LOC110490827
XM_021562492.2 mRNA downstream 29541 16686641 ~ 16690526 (-) True dph2
XM_036943906.1 mRNA downstream 39245 16667887 ~ 16680822 (-) False LOC110489710
XM_021562491.2 mRNA downstream 42087 16669367 ~ 16677980 (-) False LOC110489710
XM_021562490.2 mRNA downstream 42103 16667887 ~ 16677964 (-) False LOC110489710
XM_036943911.1 mRNA upstream 144390 17207282 ~ 17224530 (-) False actr3b
XM_021562501.2 mRNA upstream 144390 17207282 ~ 17226438 (-) False actr3b
XM_021562502.2 mRNA upstream 144390 17207282 ~ 17226439 (-) False actr3b
XR_005036055.1 mRNA upstream 144390 17207282 ~ 17226440 (-) True actr3b
XM_021562504.2 mRNA upstream 414072 17476964 ~ 17517237 (-) False LOC110489717
TU1443617 other downstream 73650 16645644 ~ 16646417 (-) True G1263444
TU1442865 other downstream 443515 16276009 ~ 16276552 (-) True G1262745
TU1442665 other downstream 684945 15989286 ~ 16035122 (-) True LOC110490929
TU1442531 other downstream 874926 15828351 ~ 15845141 (-) True LOC110489690
TU1442597 other downstream 912450 15806250 ~ 15807617 (-) True G1262503
TU1444458 other upstream 398936 17461828 ~ 17462977 (-) True G1264199
TU1445577 other upstream 1120899 18183791 ~ 18184123 (-) True G1265249
TU1445798 other upstream 1513647 18576539 ~ 18580163 (-) False G1265456
TU1445796 other upstream 1513826 18576718 ~ 18579791 (-) False G1265456
TU1445799 other upstream 1513826 18576718 ~ 18580163 (-) True G1265456

Expression Profile