RNA id: XR_005036055.1


Basic Information

Item Value
RNA id XR_005036055.1
length 2344
RNA type mRNA
GC content 0.43
exon number 12
gene id actr3b
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 17207282 ~ 17226440 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGAGCGGCCACTtgagtatctggtcaatataatAGATACTCTGTAATATAAATAACGGTACAGGGAAATAAGCGAGCACGGGGCAGTGCAATCAGCCGTGTAGCCAACCTTCAATCATACATTGGGTTTAAACTAGCCGATACAGTTGTTGCAAATAATCTATGGTGTTCTAGTATCGATAGGACAATCGTCAACACGAGCATGGCAACTCCTCTACCTCCTTGCGTGATAGATTGTGGGACAGGATACACCAAGATTGGATATGCTGGAAACACAGAGCCACAGTTTATCATGCCATCCTGCATCGCTATACGAGAGTCAGCCGGTGTAGGAGACCAGGCACAGAGGCGACTTGCGAAGGGAGTGGATGACTTGGATTTCTTTATAGGAGATGAAGGCATTGATAAGCCCAACTATGCAACCAAGTGGCCCATCAGACATGGGATGGTGGAAGACTGGGATTTGATGGAGAAGTTCATGGAGCAGATCATCTTCAAGTATCTGCGGGCAGAGCCTGAAGACCATAGCTTCCTTATGACAGAGCCTCCGTTGAACACGCCAGAGAACAGAGAGTATCTGGCTGAGATCATGTTTGAGACCTTTAATGTCCCAGGCCTGTACATCGCAGTGCAGGCAGTTCTAGCCCTGGCAGCATCATGGACGTCTAGACAAGTAGGCGAGCGAACACTGACAGGAATCGTGATTGACAGCGGAGATGGAGTCACCCACGCCATACCTGTGGCTGAAGGCTACGTCATTGGGAGCTGTATAAAACACATCCCCATAGCAGGTCGAGACATCACCTTGTTTATTCAGCAGCTCCTCAGAGAAAGGGAGGTGGGCATCCCCCCGGAACAGTCCATGGAGACAGCCAAGGCAGTCAAGGAGAGGTACTGCTACATCTGTCCAGACATTGTGAAGGAATTTGCCAAATATGACACGGACCCTGGGAAATGGATCAAGAAGTACAAAGGCATCAATGCCATCAACAAATCTGAATTCCACATAGATGTTGGATATGAACGCTTTTTAGGTCCAGAAATATTCTTTCATCCAGAGTTTGCCAACCCAGACTTCACGCAGCCAATCTCAGATATAGTTGACGAGGTTATAATGAACTGTCCAATAGATGTCAGAAGACCTCTATATAAGttgtgttgtgtactgacACATTACAGAATATTGTCCTGTCTGGCGGTTCCACCATGTTCAGAGACTTTGGCCGGCGGCTGCAGAGAGACCTGAAGCGGTCGGTAGACGCCCGGCTCAAATTGAGTGAGGAGCTCAGTGGAGGAAGGATAAAGCCCAAGCCCATGGAGGTCCTGGTGGTTACACACCACATGCAGCGCTATGCCGTGTGGTTTGGAGGATCCATGCTTGCCTCTACGCCTGAGTTTCTCCAGGTTTGTCACTCAAAAAAGGACTACGATGAGTTTGGTCCCAGCATCTGCCGCCATAACCCTGTCTTTGGTACCATGTCCTAATGCTAAAACCCACACCTACAGAACCTGCTGTTGACCCCGGCCTGGGGTCAGTCCATGCATCGTGATTGATGTCCTTACTTTACCACCATAGCACTCTAACCTACCACACAAGAGCCCCTTAGACGTTGATGTGCAATTGAATTTGTCAACAATATATTGTACAATCAGTATCGGCTAATTAGAATTCATGTGAAAGGATAAAAGTCATTGAATTAGACAAAGACCTCTTATAGCACTCATACAGTGAATTTTCAATATTGTCATTGTAGCAACATTGCAGACTATTTAATAGAATTAAACAAGAAAAAATCTAAACTGGAACACTTTGTTTGAAGCCATGAACTGAAGACTGTTTTCTTGCACCTACTCTCTTAGTTTCGCTGTACACTCTTAAGATTAACTTTAGATCCCATCCCAGGCTGCATGAATCATGTGGGAAGGCAACCCACGCTAATTCTGGAGCAGCCCAAGTTACATTTGTCCAATATCCATAGAAAGTCATGCTTTGAAAttgtatataaaatatatagataAAGATACTATATATTACAATATAACATATTTAGAAAtgtgtttatatttatattaaagATTATCAGAACAGGTATATAAAGATGTAGATCGTATTGAGGTGAAATAGTGTAACGTGAAAGAAGAGATATTTGGAGAGATTTTGTTTATTAGGTCCAAAAGTATTTATTAAATTATTTTTGTCAGCCACAAATTATCTATGGTATATAGATATATTGAagtatttatttatacatttctgTGTAAGTTATTTCCGTAGGGAACTGTGCTCACTAAAAATCAAACTGCTGTATGACGCTAATGTGAATAAAGGTACTTGGCACCTTCA

Function

GO:

id name namespace
GO:0034314 Arp2/3 complex-mediated actin nucleation biological_process
GO:0005885 Arp2/3 protein complex cellular_component
GO:0005524 ATP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1444330 lncRNA downstream 4934 17201154 ~ 17202348 (-) True G1264090
TU1443759 lncRNA downstream 298394 16875778 ~ 16908888 (-) True G1263575
TU1443645 lncRNA downstream 466925 16693875 ~ 16740357 (-) True G1263464
TU1443640 lncRNA downstream 529181 16677900 ~ 16678101 (-) True LOC110489710
TU1443631 lncRNA downstream 530142 16676594 ~ 16677140 (-) False LOC110489710
TU1444396 lncRNA upstream 126468 17352908 ~ 17353122 (-) True G1264153
TU1444397 lncRNA upstream 127232 17353672 ~ 17353939 (-) True G1264154
TU1444399 lncRNA upstream 129881 17356321 ~ 17356567 (-) True G1264156
TU1444400 lncRNA upstream 130147 17356587 ~ 17356819 (-) True G1264157
TU1444401 lncRNA upstream 132206 17358646 ~ 17358910 (-) True G1264158
XM_021562496.2 mRNA downstream 144390 16720067 ~ 17062892 (-) False LOC110489714
XM_021562499.2 mRNA downstream 194238 16720067 ~ 17013044 (-) False LOC110489714
XM_021562498.2 mRNA downstream 258844 16720067 ~ 16948438 (-) False LOC110489714
XM_036943908.1 mRNA downstream 280517 16727633 ~ 16926765 (-) True LOC110489714
XM_021562495.2 mRNA downstream 280532 16720067 ~ 16926750 (-) False LOC110489714
XM_021562504.2 mRNA upstream 250524 17476964 ~ 17517237 (-) False LOC110489717
XM_021562503.2 mRNA upstream 250524 17476964 ~ 17528010 (-) True LOC110489717
XM_021562512.2 mRNA upstream 435271 17661711 ~ 17728784 (-) False bcl2a
XM_021562510.2 mRNA upstream 435271 17661711 ~ 17728790 (-) False bcl2a
XM_021562511.2 mRNA upstream 435271 17661711 ~ 17728790 (-) True bcl2a
TU1443617 other downstream 560865 16645644 ~ 16646417 (-) True G1263444
TU1442865 other downstream 930730 16276009 ~ 16276552 (-) True G1262745
TU1442665 other downstream 1172160 15989286 ~ 16035122 (-) True LOC110490929
TU1442531 other downstream 1362141 15828351 ~ 15845141 (-) True LOC110489690
TU1442597 other downstream 1399665 15806250 ~ 15807617 (-) True G1262503
TU1444458 other upstream 235388 17461828 ~ 17462977 (-) True G1264199
TU1445577 other upstream 957351 18183791 ~ 18184123 (-) True G1265249
TU1445798 other upstream 1350099 18576539 ~ 18580163 (-) False G1265456
TU1445796 other upstream 1350278 18576718 ~ 18579791 (-) False G1265456
TU1445799 other upstream 1350278 18576718 ~ 18580163 (-) True G1265456

Expression Profile