RNA id: XM_021562514.2


Basic Information

Item Value
RNA id XM_021562514.2
length 2372
RNA type mRNA
GC content 0.46
exon number 6
gene id LOC110489722
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 17751248 ~ 17756522 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGGCACACATACGTACCATGAATGGAACTTCCACAGGCACCTTAGTCCAATtacaaccctcttcctggaaTCTGCCCAATGCCACATCACCTACAGGTACAAAGTGTAAACACATCAGGAAATGTTCCCACTTATAAGCACAAACATGTCTTGAGAAATGATCATCTTTAATACTCTGCTGCTCAGTCTGTTAGTGTGTGCACCACAATGTCAGCAGCCATGGACTCAATCAGTTGTTCAATATGTCTGGATCTACTGAAGGATCCGGTAACCATTCCCTGTGGACACAGCTACTGTATGGGCTGTATTAAAGATTGCTGGAATCAGGATGATCTGAAGGGTGTCTATAGCTGCCCTCAGTGCAGACAGACCTTCACCCCAAGGCCTGTTCTGAAGAAAAGCACCATGCTAGCAGAATTGGTGGAGACTCTGAAGAAGACAGGACTCCAAGCTGGTACCCCTGCTCACCATTATGCTGGACCTGGAGATGTTGCGTGTGATGTCTGCACTGGGAGAAAACTCAAAGCGGTCAAgtcctgtctggtgtgtctggcctcttactgtgagactcacctcCAGCCTCACTATGAATCTCCTACCTTTAAGAAGCACAAGCTGGTCAAAGCCTCCACACAACTAGAGGAGAAGATCTGCTCTCATCATGACAAACTGGTGGAGATTTACTGCCATACTGATCAGCAGTTTATCTGTTATCTGTGTACAATGGATAAACATAAAGGCCATGATACAGTCTCAGCTGAATCAGAAAGGATTGAGAGACAGAGTCAACtgggagagaaacagaaggaaACCAAACAGAGAATccagaagagacagaaagagatacaGGATGTGAGACAGGCTGTGAAGTCACTCAGGCGCTCTGCACAAGCAGCAGTGGGGGACAGTGAGAGGATCTTTACCGAGCTGATCCACTCCATTGAGAGAAAGCGCTCTGAGGTGAAAGAGCTGATCAGAGCCCAGGAGAAGGTTGAAGTGAGACGAGCAAAAGGACTGCTGAAGCAACTGGACCAGGAGATGGCTgagctgaggaggagagagggcgaGTTGGAGCAGCTCGCACACACAGAAGACAACATTCAATTCCTCCAGagtttccagtctctctgtgtccctcctcGATCTGAACACTTACTCAGCATCACTGTCAACCAACACGTCTTCTTTGAGGATGTAAGAAAATCAGTCACTGAGCTAAAAAGCCAATTAGGAAAAATCTGCTCTGGGGAAATTGCCAAGATCTCTGTAAAAGTGACAAAAGTCCACATTGTTCCACCTTCTGAGCCCCGTTGTCTTCCGTCATTTGGCACAACTCAGTCTGGACTGTCAGTTGGAGGACTAGCATCACATGGAAATGATACCACCTGTCAGAAGACGAGGCCTGAACCCAAAACCAGAGAGGAGTTCTTAGAATATTCCTGTCCGCTCACATTGGATCCCAACACGGCATTtaactgtctgtgtctgtctgagggGAACAGAAAGGTGACACGGCGTTATAAGGACCAGCTTTATCCTGCCCATTCAGACAGATTTACCACCTACCCCCAGGTGTTGTGTGGAGAGGGTCTGTCTGGAGCCTGCTACTGGGAGGTGGAGTGGAGCGGGGACTGGGTTGATATAGCTGTCTCATATAAAGGGATAAGCAGGAGTGGACCTGACGAGGGTTTGTTTAGAAGCAGTAAACAGGCCTGGTGTTTGGAGTGTGATGCTTCTGGTTGCTCTTTCTATCACAATGATAAACCGACTGTCATACCTGTCTCCTGTTCCaccagagtaggagtgtatctggaccACAGTGCAGGAACTCTGTCTTTCTACAGCGTCTCTGACACAATGACCCTACTCTGCAGAGTCCAAACCACTTTCACTCAGCCCCTATATCCTGGGTTCACTGTCTCTAGAACTGTGAATATACTGAAACCAAACAAGATTATTATAGCAAactaaaactgaaactaaaaCAAAAACTAATCTTGAAAAAACTATTCAGTAAACCGAAATAAAATAACTAactaaattgtaaaaataaataaacaaataaataaacataacctaactaggcaagtcagttaagaacaaattcttatttacattgacggcctacttGGGACCAGTTTGTGTGTCAAAAGCAATTTGCGGCCCAGAAACAGGGCAGTTGTTTGAAAATTTGTATCATTATAGTTTCtacatacagtggttcctccctTAAAAGTTACGTCATACTGAAGCGCACCTTGTGTGCTgccgcagcattctgtggcacgtcatttaattctcagccaattcttctgttactgcaagttattgctagtttgaccaccagagggcatccttgagaagcatttga

Function

GO: NA

KEGG:

id description
K10652 TRIM25, EFP; tripartite motif-containing protein 25

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1444615 lncRNA downstream 101892 17649154 ~ 17649356 (-) True G1264340
TU1444610 lncRNA downstream 108789 17642170 ~ 17642459 (-) True G1264335
TU1444583 lncRNA downstream 153214 17597735 ~ 17598034 (-) True G1264310
TU1444571 lncRNA downstream 166309 17584604 ~ 17584939 (-) True G1264298
TU1444560 lncRNA downstream 179114 17570209 ~ 17572134 (-) True G1264287
TU1444686 lncRNA upstream 12514 17769036 ~ 17769354 (-) True G1264408
TU1444787 lncRNA upstream 86208 17842730 ~ 17842986 (-) True G1264509
TU1444845 lncRNA upstream 130526 17887048 ~ 17887255 (-) True G1264566
TU1444860 lncRNA upstream 141286 17897808 ~ 17898040 (-) True G1264581
TU1444877 lncRNA upstream 151988 17908510 ~ 17908714 (-) True G1264598
LOC110489721 mRNA downstream 4950 17742649 ~ 17746298 (-) True LOC110489721
XM_021562510.2 mRNA downstream 22458 17661711 ~ 17728790 (-) False bcl2a
XM_021562511.2 mRNA downstream 22458 17661711 ~ 17728790 (-) True bcl2a
XM_021562512.2 mRNA downstream 22464 17661711 ~ 17728784 (-) False bcl2a
XM_021562503.2 mRNA downstream 223238 17476964 ~ 17528010 (-) True LOC110489717
LOC118938947 mRNA upstream 340202 18096724 ~ 18097899 (-) True LOC118938947
XM_021562516.2 mRNA upstream 413200 18169722 ~ 18178814 (-) True cavin4b
XM_021562517.2 mRNA upstream 439553 18196075 ~ 18208500 (-) True LOC110489726
XM_036943920.1 mRNA upstream 518954 18275476 ~ 18287651 (-) False LOC110489728
XM_021562522.2 mRNA upstream 518954 18275476 ~ 18291709 (-) False LOC110489728
TU1444458 other downstream 288271 17461828 ~ 17462977 (-) True G1264199
TU1443617 other downstream 1104831 16645644 ~ 16646417 (-) True G1263444
TU1442865 other downstream 1474696 16276009 ~ 16276552 (-) True G1262745
TU1442665 other downstream 1716126 15989286 ~ 16035122 (-) True LOC110490929
TU1442531 other downstream 1906107 15828351 ~ 15845141 (-) True LOC110489690
TU1445577 other upstream 427269 18183791 ~ 18184123 (-) True G1265249
TU1445798 other upstream 820017 18576539 ~ 18580163 (-) False G1265456
TU1445796 other upstream 820196 18576718 ~ 18579791 (-) False G1265456
TU1445799 other upstream 820196 18576718 ~ 18580163 (-) True G1265456
TU1446969 other upstream 1352037 19108559 ~ 19109357 (-) True G1266471

Expression Profile