RNA id: LOC118938947


Basic Information

Item Value
RNA id LOC118938947
length 1176
RNA type mRNA
GC content 0.44
exon number 1
gene id LOC118938947
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 18096724 ~ 18097899 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGTGTGATGGCAGACGCACACACGCCTGCttgtctggtcagcatgtaaatCTAGATAGAAGCAAGATTCAAGAACTCAACCCTCGCTTGCTCCTCCCTCTAAGGAACCTTAGATGCTTGTCCATTATCGAAATGAAATCATTAAATTCATAAAAAACACTTTCAGTGACCTAGAGAACCTTGAAGACTTTTACATGCTATACAGTGTCATTAGATACATCACCAATCAACCTTTCAGCAAACTCAGCAGACTTGTGAAGCTGGACCTCGGCCTCATTATCAAATACATTGAGGAAGGATCCTTCCAAGACCTGGAAAATCTTGATTACCTGGACCTGGGAAGCATATCAAAAGATTAACTCCTGCCATCTTACAAGGTCTTGTGAAACTGAAACAGCCAGTGTTGTATAACAACTGCCTTTATTTTGATAAAGACAACACTCCGCCCTAGAGTATGTGGAGTTACGCTACCAAGGCCCTGGAGGAGATGGAGTTGAACATTTTGGACCGGGTTTCTTCACGGAGTAAGTGCGTGTAAGATGTTTATCCATAGGAAGCACCATTTTGAGCAATTTCCATCCAAATAACTTTGTCCCCCTTGTCAACTTAAGACGGTATTTTGGGGCCGGCATCACTTTCAGTAACACCAATCTAGTACTGTCCTTCATCCACTTAAATCACTGGAAATGCTGACCTTTTACAAAACAGACCTGGATCCTCTACCCGACATTTTACTGCCTCCAGGGAATTCCTTGAAGGTTTTACTAATTCAGTCCAACCATTTACACGTTTTGGAGAAATCTTTGTTTGATAACCTCCCTATGTTGCTATTCATTGATATCAGCGACAACCCACTGTACAGTACCCGCCCAAATGCCTGGTTCAAAAGCTTTAAATTATCCTACTGTGCACATAGCCCATATCTATGACCGCCACTGTGACAATATGGGGACAGCTCACTACATGCGGGAATTAGATGACAAAGCATGCTCTTATGACCAGTTCTTCCACAGCCTTTTCTTGGCCACCTTCCTTCTGGACTTGGTGACTGTGACCATGTGCCTAATCTGGCACAATCAGAAATGTGCCATCTATTACCTGCTCCTTCCGCGGCCTCGCCTTCGAAGGCATAAGGCAGCGGGGAAAGGTTGCTACAGCTCCAGAGATGAGCCGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1445136 lncRNA downstream 4024 18092289 ~ 18092700 (-) True G1264847
TU1445067 lncRNA downstream 101588 17993783 ~ 17995136 (-) True G1264780
TU1445020 lncRNA downstream 165814 17930670 ~ 17930910 (-) True G1264738
TU1445016 lncRNA downstream 173136 17923335 ~ 17923588 (-) True G1264734
TU1444877 lncRNA downstream 188010 17908510 ~ 17908714 (-) True G1264598
TU1445184 lncRNA upstream 13437 18111336 ~ 18111884 (-) True G1264893
TU1445195 lncRNA upstream 31251 18129150 ~ 18129369 (-) True G1264904
TU1445196 lncRNA upstream 32599 18130498 ~ 18130752 (-) True G1264905
TU1445199 lncRNA upstream 34979 18132878 ~ 18133093 (-) True G1264908
TU1445200 lncRNA upstream 35434 18133333 ~ 18133534 (-) True G1264909
XM_021562514.2 mRNA downstream 340202 17751248 ~ 17756522 (-) True LOC110489722
LOC110489721 mRNA downstream 350426 17742649 ~ 17746298 (-) True LOC110489721
XM_021562510.2 mRNA downstream 367934 17661711 ~ 17728790 (-) False bcl2a
XM_021562511.2 mRNA downstream 367934 17661711 ~ 17728790 (-) True bcl2a
XM_021562512.2 mRNA downstream 367940 17661711 ~ 17728784 (-) False bcl2a
XM_021562516.2 mRNA upstream 71823 18169722 ~ 18178814 (-) True cavin4b
XM_021562517.2 mRNA upstream 98176 18196075 ~ 18208500 (-) True LOC110489726
XM_036943920.1 mRNA upstream 177577 18275476 ~ 18287651 (-) False LOC110489728
XM_021562522.2 mRNA upstream 177577 18275476 ~ 18291709 (-) False LOC110489728
XM_021562524.2 mRNA upstream 177577 18275476 ~ 18291710 (-) False LOC110489728
TU1444458 other downstream 633747 17461828 ~ 17462977 (-) True G1264199
TU1443617 other downstream 1450307 16645644 ~ 16646417 (-) True G1263444
TU1442865 other downstream 1820172 16276009 ~ 16276552 (-) True G1262745
TU1442665 other downstream 2061602 15989286 ~ 16035122 (-) True LOC110490929
TU1442531 other downstream 2251583 15828351 ~ 15845141 (-) True LOC110489690
TU1445577 other upstream 85892 18183791 ~ 18184123 (-) True G1265249
TU1445798 other upstream 478640 18576539 ~ 18580163 (-) False G1265456
TU1445796 other upstream 478819 18576718 ~ 18579791 (-) False G1265456
TU1445799 other upstream 478819 18576718 ~ 18580163 (-) True G1265456
TU1446969 other upstream 1010660 19108559 ~ 19109357 (-) True G1266471

Expression Profile