RNA id: XM_021562517.2


Basic Information

Item Value
RNA id XM_021562517.2
length 2753
RNA type mRNA
GC content 0.42
exon number 10
gene id LOC110489726
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 18196075 ~ 18208500 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGCGTCATGTGATACCCAAGCGTCACTGAAGCCCTTTGTTGATGGTGATTCACAAAATCTCACTCAAGACATTGTCTGGGTAAATTGCTACAACAAAATCATTTATTTTCGCCTTTGTGGGATTGTGTTGTGGAATGATGCAGAGAGATTCTCGGAGGGACATTTTAAACCAGCTGTTTGCCGCTGGGATAAAATAGAGGCAGACGCGTCAAAGGTAAATGCGACAGTCAAAACAGCTCATTATCGCACACCCTATCCCATACGACGGCCAGACGAGCGATCAATAGAGCAAAGCCAACATTTCGTTTGTGCAATTTGTGAGCTAAAGTCCGATATAATGCAGTTTTTTTATATGGCTATGCTGGGAGATAATCCCCGTTCTGCAAAGGAGATGAAACCTTTTTTTAGCCGTGGGTGAAACAGTTTGCCAACAACACCGCGTTTTGTTCTCCGTCTACCAATTCACATCTGGTGGATTCGTTGATGTATTTCTGCCATTTGAATGAAAAAAGGCATATGTTGTGATTTGGAGAAAAGACGGTGTCCACTCTACACAGCATTGTAAGCATCATGTCCATAGGATATCCCCTCTCATCTCACGGACCCTCAGCAGGccgttttttctctctcctctgccttttGGCCGTCTCTACACTGCCTGGAGCACAAGCCTCTTACCCTGAGAGCAGCGAATGTATCTCAGGAAAAGGCAAGGACTGCTTGGATTTGTCTGAGAAGAAAAGTGACCTGAGAGTGTGTGACGCTGCAACATGTCGTTACGGTGGGACATGTCAAGAGAATGGGGCTGACCTGAAATGTGTCTGCCAGTTCCATTGCTCTAAGAAGtacatccctgtttgtgggtCCAACGGAGACACCTATCAGAACGAGTGCTTCTTGAGGAGAGCAGCATGCAAGCAGCAGAAGTCCATATCGCAGGTCTCTGACGTGGCCTGCTATACAGATGGCAGTTCTGGATCTGGCGACGGAGATGATGAAGGATCAGGCACAGGCAGAGGAAAAAAGCCCACAAAATGTGTCAACTGCAAGTTTGGAGCAGAATGTGATGTGGACTCTGAGGATATATTGTGCATGTGCAACATTGACTGCAGTGGCCATAATGACAACCCGGTGTGTGGAACAGACGGAAAATCTTACATTACCCCCTGTCACGTAAGAGAGGCTTCGTGCTTGAAGCAGGTGAAGATTGACGTGAAGCATCTAGGGAGTTGTCCAGaAAAAGGGAAGAAGAAAAACGAAGACGATGGTAGCAACAGCAAGACGGATCTTTTTGACACGGTAGACACAGGGGAGGACAGAGCTTATGGAGGGATCCCCACCCTCTGCACAAAGGACTACGCAAACTTCTGTGAACACGGCCAATGTGAAATGAAGTATAGCATCCCCACCTGCCGGTGTGACTCGGGCTACACTGGCCAGCAGTGTGATGAAATCCAAGACTTCAACATCCTGTACGTGGTGCCCAGTGGACAGAAACTCCACTACGTTCTCATAGCAGCCGTCATCGGAGCCGTACAGATCGCCATCATTGTCGCTGTTGTCATGTGTTTCACAAGGAGGTGTCCCAAAACCCAGAGGGGACGAAGACAACAGCAACACCTTGGACACTTTCCCTCTGGGACTTCATCCAGGATGATGTAGCAGTTTTTTGTGTGCATTTTTGCACCATATGGATCACATTTTTTGATATCTGTTGTTTTGTCTCCTTTATTTTGAATGGatgtttatgtatttattttctctAATGGGGCCTTCGTTTTCTCTCCCTTCTGGACATATGCAGCTCTTGCTGCTTTTTTTCAGACTGctgcattatttattttttcctacGGGCAGAAAACGGACAGCCATTCTCCTCTGATCGTCCATTGTTTGCAAGGTGGTATTGGTATCTTTAGGCACACAAACCTTGGATACCTAGGGTCTGGACTAGGGTCATGCTATTTATGCTATCTAGGGTCATGCTATTTATCAGCGTCTCTGACCCTCTCTCAgtacctttttttttatttttatgaaacaCAACTAAATACCAAATGCAGTTTTCTATAAAGGAGGTAAAAGCTGATGTGTACAGTTTGTTTTGGTTACTTTTCAATATACCATTCCGGGGATGGAACAATTTTTTTGACTAGGTActaatttaaatgtttttatatatttttatttttattttttatgttctaATGTTGTTTGTATTATTGCTAATGAAATAGTTGCATATAGCATGAGCTGTGAATGTGTTTAGTGATGTAGTTTTAGTAATATTAAATGATCTGTGTTTCAAACACTCGTGTTGCCTTCATATTATTATGACTAGATCAATGACGGAGCCTAAATCATTTTCAGAAAATAATTTATCACAATGTTAAAATTGTTATGGAAGAAAAGGCGTATTCATATGATGTTATTGAAAAAATAAATGCACTGATTTTAATGCAGTTCTTGATTTACTTTGTTAAATCAAAAAATCTATAACATTTGGAATGTGGACAAGTCACATGGTTGGGAAAGACTCTGAGCCCTAGTTATAAAACTGCATGTACAGTGCctatcagaaagtattcacatcccttgacttgttgcacattttgttgtgttacatcctgaatttaaaaCGGATTCAAATTGAGATTATTTGTCACGGGCCGACACACAATATCCCAGTAATGTCAAAGTGggattatgtttttagacatttttacaaattcattaaaaattaaaaactgaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1445588 lncRNA downstream 345 18195501 ~ 18195730 (-) True G1265260
TU1445233 lncRNA downstream 28559 18167310 ~ 18167516 (-) True G1264941
TU1445232 lncRNA downstream 29670 18166081 ~ 18166405 (-) True G1264940
TU1445229 lncRNA downstream 35276 18160284 ~ 18160799 (-) True G1264938
TU1445228 lncRNA downstream 36767 18158953 ~ 18159308 (-) True G1264937
TU1445599 lncRNA upstream 3009 18211509 ~ 18211741 (-) True G1265270
TU1445600 lncRNA upstream 4020 18212520 ~ 18212841 (-) True G1265271
TU1445643 lncRNA upstream 72230 18280730 ~ 18281251 (-) True G1265310
TU1445708 lncRNA upstream 226483 18434983 ~ 18436635 (-) True G1265371
TU1445792 lncRNA upstream 363445 18571945 ~ 18572166 (-) True G1265452
XM_021562516.2 mRNA downstream 17261 18169722 ~ 18178814 (-) True cavin4b
LOC118938947 mRNA downstream 98176 18096724 ~ 18097899 (-) True LOC118938947
XM_021562514.2 mRNA downstream 439553 17751248 ~ 17756522 (-) True LOC110489722
LOC110489721 mRNA downstream 449777 17742649 ~ 17746298 (-) True LOC110489721
XM_021562510.2 mRNA downstream 467285 17661711 ~ 17728790 (-) False bcl2a
XM_036943920.1 mRNA upstream 66976 18275476 ~ 18287651 (-) False LOC110489728
XM_021562522.2 mRNA upstream 66976 18275476 ~ 18291709 (-) False LOC110489728
XM_021562524.2 mRNA upstream 66976 18275476 ~ 18291710 (-) False LOC110489728
XM_036943919.1 mRNA upstream 66976 18275476 ~ 18291919 (-) False LOC110489728
XR_005036056.1 mRNA upstream 67366 18275866 ~ 18291714 (-) True LOC110489728
TU1445577 other downstream 11952 18183791 ~ 18184123 (-) True G1265249
TU1444458 other downstream 733098 17461828 ~ 17462977 (-) True G1264199
TU1443617 other downstream 1549658 16645644 ~ 16646417 (-) True G1263444
TU1442865 other downstream 1919523 16276009 ~ 16276552 (-) True G1262745
TU1442665 other downstream 2160953 15989286 ~ 16035122 (-) True LOC110490929
TU1445798 other upstream 368039 18576539 ~ 18580163 (-) False G1265456
TU1445796 other upstream 368218 18576718 ~ 18579791 (-) False G1265456
TU1445799 other upstream 368218 18576718 ~ 18580163 (-) True G1265456
TU1446969 other upstream 900059 19108559 ~ 19109357 (-) True G1266471
TU1447224 other upstream 1226518 19435018 ~ 19453770 (-) True G1266708

Expression Profile