RNA id: XM_021562522.2


Basic Information

Item Value
RNA id XM_021562522.2
length 2721
RNA type mRNA
GC content 0.47
exon number 20
gene id LOC110489728
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 18275476 ~ 18291919 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTTAGCAAGCACAGCCACTATATCAAAATGACGATGTCGTAAAaatttatgaaaacaaaaatgtgatgtTCGATGTTAAGGGTTATGCACAAGATTAACAGTGGGTTAAGGTTCGTTTTTATATCACATTTTAAGATGatcaattgtagaaataggcggggtttatgactGACTAGTGACGAACCTATCTTTCGTACAAATCAGTTCTGAAATCGTTATACAGTACAAACACTTGACAACTACAAGACATCATAGCATAACTGAAAGTTCACAATGAGTGAGGAACACTACCTCGAACTTTGTGAAAACCCTGTGCAATTTGAAAATGCGTCAAGCGTCAACAATGTGTTTTTCGACGAAGCGAATAAACAGGTGTTTGCAGTACGATCAGGGGGTGCCACTGGGGTTGTGGTTAAAGGACCAGATGACAAAAACTCAGTTGCCTTCAGAATGGATGACAAAGGAGAGGTGAAGTGCATTAAGTTTTCGATCGGAAATAAGATTTTGGCTGTCCAGAGAACACCAAAATCTGTGGATTTCATAAGCTTCATACCGGATTATCCGCATTTGGAATGCTCCCAGGAATGTAAGATGAAGAATGCCAGTATTTTGGGCTTCTGTTGGACCAACTGGAATGAAATCGTTTTCGTCACTGACCAGGGAATTGAGTTCTACCAGGTGCTTCCTGACAAACGCAGCCTGAAGCTGCTGAAGAGTCAGAGCGTCAATGTGAACTGGTACATGTACTGTCCTGAGACTGCAGTCATCCTGCTCTCTACCACCGCCCAGGGCAACGTGCTGCAGCCGTTTGCCTTCAAAAGTGGGACCATGTCTAAAATGCCCAAGTTTGAGATCGAGCTTCCAGTGGTTCCCAAGCCAGCCAAGCCCAATCTGACAGAGAGGGACATTGCTGTGGCCACCATTTACGGtcagctgtatgtaatgtatctGAAGCATCACTCCAGAACTACTGACAGTCCCTGTGCTGAGGTGGTCCTCTATCAGCTACCCAGGGAGGGATCCTATAAGAAGACCAACGTGTTGAAACTCAACACCACAGGGAAGTTTGCCCTCAACGTGGTGGATAACCTGGTTGTTGTGCATCATCAGAGCTCTCAGACCTCCATCATATTTGACATCAAGCTGCGGGAGCCTGACTGTGCCCTAAACGTCCATCAGCCTGTGTTGCCTGGTCGCTCCATCCACCCCTACAGGATTCCCCTAACAGGTCTTGCTGCTGTACCCACCCAGCCTCCTGTGCCTTGTGAACTCTACTCCTCATCTTGGAGCGTCTTTCAACCCGATATCATCATCAGTGCAAGCGAAGGGTATCTGTGGTATCTGCAGGTGAAGCTGCCGCCGACCGTCAACCTCCTGCAGGACAAGGGCAAGCTGATGGACTTCCTCCTGCGTAGACGAGACTGCAAGATGGTAATCTTGTCCGTGTGTGCACAAATGCTCAATGGGGGAGATAAGGGGGGCTTACCAGTGGTGGCCACAGTGTTCGACAAACTCAACCAAGTTTACAAAGAGTACTTGGAGGCAGAGCAGACCTACACTGTGGCTACGGAGTCTGGTCCCAGCCGAGGCAGCGCTGCTCGGGAGAGGCCCGTCCGGACGCAGGCGGTTATCGACCAGTCAGACATGTACACCCACGTCTTGTCCTCCTTCTCTGAGAAAAAGGACACGTCTCACAAGTTTATAATTGCTGTGCTGATGGAGTACATTCGCTCACTCAACCAGGTCCAGATCACCGTGCAGCATTACCTGTATGAGCTGGTCATTAAGATGTTGGTTCAGCACAACCTCTTCTACATGCTCCATCAGTTCCTCCAGTACCACGTCCTCAGCGACTCCAAGCCACTGGCCTGTTTGCTGCTGTCTCTAGAAAGCACATACCCCCCTGCACACCAGCTCTCCCTGGATATGTTGAAGaGACTGTCCACAGCCAATGATGAGATCGTGGAGGTGCTCCTGTCCAGACAGCAGGTGCTGGGTGCGCTGCGCTTCATCCGCAGCGTGGGTGGCCACGGCAACATCTCCGCCCGTAAGTTCCTAGACGCAGCACGCCAGACAGCCGACCAGATGCTCTTCTACACCATCTTCCGGTTCTTCGAGCAGAGGAACATGCGTCTGAGAGGCAACCCCAGCTTCATCCCAGGTGAGCACTGTGAGGAGCATGTGGTATACTTCAAGCAAGTTTTCGGGGAGCAGGCACTCATGAAGCAAGTAACAGTTTGAGTCGAGACATATTTTATGTTATCCCACAGTCCATTAACTTATTGTAGATAATTGTTCAAATCATGCTAATAAAATCATTTGTACATATTCTAACAATCAATGGTGtatgacatgtcatggttgtgcATTAGTCCGCTTGACAAGGCGTCCTTCTGACTAACCCTGGGTCATGCTCATTAGGGCATTCGAtagaaaacgttttgcaacggtaAACGAAAaggagcatttcttattggacaagtcaaGGTAGTCCTTctgcctaatgaacacaaaccTGGCTTATGgtttgaaaaacataattatgATTGTGTCTGCTTCTATTGCCGACGGAAAACCTGAAATAATTTGATTATACGTAGCTTTGACTTTTTAGGAAATTAAAATGTCATTCCTTTATTTTAAGCATTGTAGCGTCTAGGACATAGCATTACAGTGGAATGTTGTACTTTTGTATGTGTGAAGTGCACAATTAAAATTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1445600 lncRNA downstream 62635 18212520 ~ 18212841 (-) True G1265271
TU1445599 lncRNA downstream 63735 18211509 ~ 18211741 (-) True G1265270
TU1445588 lncRNA downstream 79746 18195501 ~ 18195730 (-) True G1265260
TU1445233 lncRNA downstream 107960 18167310 ~ 18167516 (-) True G1264941
TU1445232 lncRNA downstream 109071 18166081 ~ 18166405 (-) True G1264940
TU1445708 lncRNA upstream 143274 18434983 ~ 18436635 (-) True G1265371
TU1445792 lncRNA upstream 280236 18571945 ~ 18572166 (-) True G1265452
TU1445793 lncRNA upstream 281841 18573550 ~ 18574311 (-) True G1265453
TU1445794 lncRNA upstream 282958 18574667 ~ 18574949 (-) True G1265454
TU1445808 lncRNA upstream 375357 18667066 ~ 18683212 (-) True G1265464
XM_021562517.2 mRNA downstream 66976 18196075 ~ 18208500 (-) True LOC110489726
XM_021562516.2 mRNA downstream 96662 18169722 ~ 18178814 (-) True cavin4b
LOC118938947 mRNA downstream 177577 18096724 ~ 18097899 (-) True LOC118938947
XM_021562514.2 mRNA downstream 518954 17751248 ~ 17756522 (-) True LOC110489722
LOC110489721 mRNA downstream 529178 17742649 ~ 17746298 (-) True LOC110489721
XM_036943923.1 mRNA upstream 318 18292027 ~ 18301287 (-) False LOC110489729
XM_036943922.1 mRNA upstream 547 18292256 ~ 18301283 (-) False LOC110489729
XM_021562525.2 mRNA upstream 547 18292256 ~ 18301287 (-) True LOC110489729
XM_021562563.2 mRNA upstream 33601 18325310 ~ 18365342 (-) False unm_hu7910
XM_036943973.1 mRNA upstream 33601 18325310 ~ 18365345 (-) False unm_hu7910
TU1445577 other downstream 91353 18183791 ~ 18184123 (-) True G1265249
TU1444458 other downstream 812499 17461828 ~ 17462977 (-) True G1264199
TU1443617 other downstream 1629059 16645644 ~ 16646417 (-) True G1263444
TU1442865 other downstream 1998924 16276009 ~ 16276552 (-) True G1262745
TU1442665 other downstream 2240354 15989286 ~ 16035122 (-) True LOC110490929
TU1445798 other upstream 284830 18576539 ~ 18580163 (-) False G1265456
TU1445796 other upstream 285009 18576718 ~ 18579791 (-) False G1265456
TU1445799 other upstream 285009 18576718 ~ 18580163 (-) True G1265456
TU1446969 other upstream 816850 19108559 ~ 19109357 (-) True G1266471
TU1447224 other upstream 1143309 19435018 ~ 19453770 (-) True G1266708

Expression Profile