RNA id: XM_021562525.2


Basic Information

Item Value
RNA id XM_021562525.2
length 2180
RNA type mRNA
GC content 0.48
exon number 13
gene id LOC110489729
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 18292027 ~ 18301287 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAAGGTTGGTTTGCGGACCGCCATTATGTCATGGAAGAAGAGAAGGTGACGTCATTTCCTTATTCAGGAAAAAGAACGTCAGTCAGATAATTTGCGCTGTAGCCCTTGAAGTCTTGTTATTTTGTGACATTAACgtttaaatactgtagtaattTGACTTACGCTAACACATTGACATTAAAGTTTTTATTTCAGAAAGCTAACGAAAGAGACTATCGTCGTAGCCAACAGTTTTGTACGTAGCTCTGCTTTTTAAACCTGTCCTTGCGCAAACATTATTCACCATCAAGCCCAACATCTGACTGTCATGGATCAAATATCGATCACTGCAGAAGTACCAAAGAGTCCATGGGGTGCCACCACAACCAAGGTGGTGTGTCCCTGCTCCTTCACTGATGTCATGAGCGAGCAGCTGGCCAAACAACTGGATGATGAAAGTCATTCTTTCCCTGATTTCTCAAAtgtCAGCGCTGCTCTGGATGCCGGTgaggagcgagagacagacagtgatctGATGCTGGCTCAGATGCTGCAGATGCAGTTTGACAAGGAGTTTGACACCCAGCTACGCACAGAAGAAAGGAAGTTCAATGGCGATAGCAAACTATCCATCTCCTTTGAGAACTATCGCATGGTGCACCCTTACGAGGCCAGCGGCAGCTCCGAGGATGAAGTTGATTGGCAAGATAGTTGTGACGACCCCTACAAAGCTGACAAACCCACGATAACTCCAAGGAGAGGCTTTACTGGGAAAGGCAAGAACATCACTACTAAGCACGATGAGGTTGTGTGTGGCAGGAAGAATACTGCACGCATGGACAATTTTGCCCCAGAGATCAATGTGGGAGATGGGCTTGGCATGGACCTGAAGCTTTCCAATCAGGTCTACAACTCCCTCAAGCAACACTGCTACTCCGAGCAGCGTCGCAGTGCACGGCTGCATGAGAAGAAGGAGCACTCCACTGCTGAACAAGCAGTGGACCCAAGGACCCGTCTGCTCATGTACAAAATGGTGAACGCAGGCATTCTGGAGAACATCAACGGCTGCATCAGCACTGGAAAGGAGTCTGTGGTGTTCCACGCAAATGGGGGAAGCATGGAGAATAATGCTGTCCCAGATGAGTGTGTGCTCAAGGTCTTcaagaccacactcaacgagtTCAAGAACCGTGACAAGTACATCAAGGATGACTACCGCTTCATAGACCGCTTCAGCAAGCTGAACCCCCGCACGATCATCCGCCTGTGGGCTGAGAAGGAGATGCACAACCTGGCTCGTATGAAGAAAGCTGGCATTCCATGCCCCGAGGTGGTGGTTCTGAAGAAGCACATCCTTGTGATGTCGTTCATTGGCAAGGACCATGTGCCGGCTCCCAAACTGAAGGAGGCCATGTTGGGCTCTGAGGACATGAAGAGGGCCTATTACCAAGTGGTTCATATGATGCAACAGTTGTATCAGGAGTGTAACCTTGTCCACGCTGACCTGAGTGAATACAACATGCTGTGGCATGAGGGCAAGGTTTGGCTGATTGATGTGAGTCAGTCCATCGAGCCCAATCACCCTCACAGCCATGAGTTCCTATTCAGGGACTGCAGGAACGTGGCCACGTTCTTCCAGAAGGGCGGGGTGTCTGAGTCCATGAACATGTACGAGCTCTTCAATGTTGTGTCTGGGCTGCAGCTCAGTGGTGACAGCGAGGCAGAGTTCCTTGCCCAGATTGAGGCACTGGAGAAGATGAATGAGGACCACGTGCAGAGAAGGGGCAAGAAAATGTACAACTTCAGCGACGGAGGACCTCCCCTATTACACGACGATGATTAACAATCAGATATTAGACACCATGAATAGTTACATGGAACCTGTTTGGGTGATTGTTTGAGAGAATGGGTCGAGTAAACCCCCCCATGGTCTCAGTGAGGTATGCAAGAGGTCGAAAGGTCGCTGCATCCTAAGATGGTGTCATAGGCTTCATTGGGCTAAAAAGGCTCCAAACCACCTTCCATGAAATGTCAACATCTCATTCCGTTACTACGGCTGTAAATGGAATGGATGGGGATGTCTGACGGGGTACATGACAGACTGCGTCTACATGCACACACAATAATTGCTTTTTAAATTAGAGTATTAGTAACCAGCATTCATGACATTATGAACAAGTTATCTTCTCAAGTAAACTGAG

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K08872 RIOK3, SUDD; RIO kinase 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1445643 lncRNA downstream 11005 18280730 ~ 18281251 (-) True G1265310
TU1445600 lncRNA downstream 79415 18212520 ~ 18212841 (-) True G1265271
TU1445599 lncRNA downstream 80515 18211509 ~ 18211741 (-) True G1265270
TU1445588 lncRNA downstream 96526 18195501 ~ 18195730 (-) True G1265260
TU1445233 lncRNA downstream 124740 18167310 ~ 18167516 (-) True G1264941
TU1445708 lncRNA upstream 133696 18434983 ~ 18436635 (-) True G1265371
TU1445792 lncRNA upstream 270658 18571945 ~ 18572166 (-) True G1265452
TU1445793 lncRNA upstream 272263 18573550 ~ 18574311 (-) True G1265453
TU1445794 lncRNA upstream 273380 18574667 ~ 18574949 (-) True G1265454
TU1445808 lncRNA upstream 365779 18667066 ~ 18683212 (-) True G1265464
XM_036943919.1 mRNA downstream 337 18275476 ~ 18291919 (-) False LOC110489728
XR_005036056.1 mRNA downstream 542 18275866 ~ 18291714 (-) True LOC110489728
XM_021562524.2 mRNA downstream 546 18275476 ~ 18291710 (-) False LOC110489728
XM_021562522.2 mRNA downstream 547 18275476 ~ 18291709 (-) False LOC110489728
XM_036943920.1 mRNA downstream 4605 18275476 ~ 18287651 (-) False LOC110489728
XM_021562563.2 mRNA upstream 24023 18325310 ~ 18365342 (-) False unm_hu7910
XM_036943973.1 mRNA upstream 24023 18325310 ~ 18365345 (-) False unm_hu7910
XM_036943974.1 mRNA upstream 24023 18325310 ~ 18365347 (-) False unm_hu7910
XM_036943975.1 mRNA upstream 24023 18325310 ~ 18365362 (-) False unm_hu7910
XM_036943970.1 mRNA upstream 24023 18325310 ~ 18365370 (-) False unm_hu7910
TU1445577 other downstream 108133 18183791 ~ 18184123 (-) True G1265249
TU1444458 other downstream 829279 17461828 ~ 17462977 (-) True G1264199
TU1443617 other downstream 1645839 16645644 ~ 16646417 (-) True G1263444
TU1442865 other downstream 2015704 16276009 ~ 16276552 (-) True G1262745
TU1442665 other downstream 2257134 15989286 ~ 16035122 (-) True LOC110490929
TU1445798 other upstream 275252 18576539 ~ 18580163 (-) False G1265456
TU1445796 other upstream 275431 18576718 ~ 18579791 (-) False G1265456
TU1445799 other upstream 275431 18576718 ~ 18580163 (-) True G1265456
TU1446969 other upstream 807272 19108559 ~ 19109357 (-) True G1266471
TU1447224 other upstream 1133731 19435018 ~ 19453770 (-) True G1266708

Expression Profile