RNA id: XM_021562564.2


Basic Information

Item Value
RNA id XM_021562564.2
length 2415
RNA type mRNA
GC content 0.47
exon number 6
gene id LOC110489731
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 18306214 ~ 18325293 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCAACCAACTGGGCGCAATTGCCGCGAACGGAACTGATGGAGACTACGTACATGTTTTATTGGAGACTTGAAAAGACCAATTGGATGAGAATAGCCTATGGTTTACGTCGTGAGAATGGTGTGATACTTTGCGGCACACGGAATTGGTGATTCCCCACCTCTGTGAGTCTCCATCACTATCTGTTCCCAGTTAGTCTCGTATTCGTCCTCCAGGCAGAGTGCGTACAACCCTCATCGAAGCAGACACAGCCGCGCATGGCCGCCAATCTGTTCCGTTTATGGGGCACAGCATCTTTTCAGGCAGCCTACACCGTAGAATACATTCAGACAACGCAGTCCTTTAGGCTACAggatttcaaatatttttttacttgaTAGCCTTTCAAGGAAATAttatatttttctttatttacGTTTTCCTTGCCAACTGGATAAAAATAGGCTATATATTATTTATTGAAACTCCTTTATGGCCAGTATTTATAAATATCAATGGAATGATACGTCTGCTGTGCAGTCCTGCGCTTCATCGGATACCTGGCTGGTTTTACAGGGCGTGGTGTTCATGCTAAACACTACAGGTGACACAGCCCAGGGGGTGGTGTACTGGAGAGACGCGTGTGCCGGTGAGACGCCACCAAAAATGTACAGAACAGAAATCAAGACTGTTTACTAAGGAGATCTCTACAATAATATTTAGCCAAAACCCAGATATAGAGAGAGTGTGAACTTGACTAAAGCCAAAAAAAATGACTCACTTGCAAGCGGGCCTGAGCTCCGAGACCACAGAGAAAGCTCGTCAGGAGCTCAACGAGAACCCTGACACCCTCCATGCGGACATCCAGCAGGTGCGCGACATGATCGTGACACGGCCCGACATCGGCTTCCTGCGCACGGACGACGACTTCATCCTGAGGTTTCTGCGGGCGCGCAAGTTCAACCAGGCAGAGACCTTCCGGCTCCTGGCCCAGTATTTTCAATTCCGCCAGCAGAACCTGGACATGTTCCAGAGCTTCAAGGTGGACGACCCGGGGATCAAGAGGGCTCTGATGGACGGCTTCCCAGGTGTCCTGGAGACTCCGGATCAGCATGGCCGGAAGATACTCATCCTATTTGCttccaactgggaccagggaagGAGCTCTTTCACAGACATCCTCcgagccatcctcctctccctggaggtTCTCATAGAGAACCAAGAACTCCAGATCAACGGCTTCATCTTGATCATCGACTGGAGTAACTTCTCCTTCAAGCAGGCATCCAAGCTCACGCCCAACATTCTCAAACTGGCAATCGAAGGCCTGCAGGACAGCTTCCCTGCTCGCTTCGGTGGGATCCATTTTGTGAACCAGCCCTGGTATATCCACGCCATGTACACCATCATCAAGCCTTTCCTCAAGGACAAGACTAGGAAAAGGATTTTCCTCCACGGGAACAACCTCAACAGTTTACACCAGCTTATCCTACCCGATTGTCTGCCGTCCGAGTTTGGTGGCACGCTGCCGCCCTATGACATGGGCATCTGGGCACGGACCCTCTTAGGGCCCAACTACAACGACGAGACAGAGTACACACTCACCTACGACGCCCTCCATGTCAAAGGGAGCTATGGTGGCGGAGATAAGGAATGTGCCAACAAACTTCTGAAAAGGTCCGAGTCAGCCGTGGAGCCGGGTACCCTACGGCAAGCTGACAGGGACAACACGGCACAGCCACTCCTGGCTCTGGACTGATCACTCCGATCCGTCCACATTGTATCCAAAGCACTCTAATTTGGATTCCAACCCCACTGACTCCAAAACCCTAAACTGAACTTTGAGAAAGTCAAAAACGCAGGCACGGACCCAAAATGGAGACTAAACCCTTGTTCACATGGAGCTACTGTACTGAAAACCTCTCATCGCTTGACTGTGAGCCAGTGCCAGTTTCAAAAGCTGTGCCATCCACTTTCACTGGCAAAACTATAGGTCACCAGCCATCCAAATCAATGCCGATAGGAGTAGAATGATTAAACTAATGTTTGTTTTAACAGTACCACTAGGAAAGACTGACCGAGTTAAATGTCCAAGAGCCCCGCAAACAGAATGCCAAACTACTGTATCTTACTGTTTTAGGGGCTGTCATTTCTATGAAAGTCGATATATTTCAAGATTGTATATTTATCAGGGCTACTGCACAATCAGTGTGACCTCCATCGAACCAAAATGTATTTAAGTCAACTTTAAAAGAATGTATAAGaaatgtattttaaattatgtGCTGTGTtcattacgtgtgtgtgtgtttaggttttGGCTATCGAAAATCACACAGCGGAGTATAATTTCAAAATGAGATGAATCACAGTATTGTTACACTATATACATGAAGCTACCTATGTAAATAAACACAACTTTCTGTTTATGTTTA

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005215 transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1445280 lncRNA upstream 26563 18278750 ~ 18279651 (+) True G1264985
TU1445271 lncRNA upstream 87671 18218336 ~ 18218543 (+) True G1264977
TU1445255 lncRNA upstream 112819 18193118 ~ 18193395 (+) True G1264961
TU1445252 lncRNA upstream 115165 18190843 ~ 18191049 (+) True G1264958
TU1445146 lncRNA upstream 140725 18164931 ~ 18165489 (+) True G1264857
TU1445334 lncRNA downstream 44479 18369772 ~ 18422663 (+) True G1265027
TU1445383 lncRNA downstream 108336 18433629 ~ 18436883 (+) True G1265070
TU1445350 lncRNA downstream 253553 18578846 ~ 18579814 (+) True scn5lab
TU1445352 lncRNA downstream 259468 18584761 ~ 18618426 (+) True G1265044
TU1445890 lncRNA downstream 410024 18735317 ~ 18735521 (+) True G1265545
XM_021562519.2 mRNA upstream 30620 18227829 ~ 18275594 (+) False LOC110489727
XM_036943918.1 mRNA upstream 30620 18247143 ~ 18275594 (+) True LOC110489727
XM_036943917.1 mRNA upstream 134853 18101687 ~ 18171361 (+) True dnah5l
XM_021562515.2 mRNA upstream 214083 17989845 ~ 18092131 (+) True LOC110489724
XM_036943913.1 mRNA upstream 664406 17549306 ~ 17641808 (+) False LOC110489719
XM_021562572.2 mRNA downstream 64864 18390157 ~ 18580116 (+) False scn5lab
XM_036943977.1 mRNA downstream 125931 18451224 ~ 18580114 (+) False scn5lab
XM_021562577.2 mRNA downstream 525338 18850631 ~ 18855321 (+) True LOC110489736
XM_021562582.2 mRNA downstream 534404 18859697 ~ 18866106 (+) False LOC110489737
XM_021562583.2 mRNA downstream 534458 18859751 ~ 18866106 (+) False LOC110489737
TU1442095 other upstream 2412050 15892968 ~ 15894164 (+) False mcmdc2
TU1441984 other upstream 2569797 15735930 ~ 15736417 (+) True G1261980
TU1441924 other upstream 2599675 15696925 ~ 15706539 (+) False LOC110489686
TU1441927 other upstream 2601940 15696925 ~ 15704274 (+) False LOC110489686
TU1440827 other upstream 3111269 15193012 ~ 15194945 (+) True LOC110489660
TU1446004 other downstream 534818 18860111 ~ 18862511 (+) True LOC110489737
TU1446540 other downstream 1348820 19674113 ~ 19680105 (+) True epb41l3a
TU1448574 other downstream 2515002 20840295 ~ 20841398 (+) True G1267949
TU1449889 other downstream 3460928 21786221 ~ 21794253 (+) False slc12a7b
TU1451171 other downstream 4807566 23132859 ~ 23136721 (+) True LOC110489812

Expression Profile