RNA id: XM_021562563.2


Basic Information

Item Value
RNA id XM_021562563.2
length 4516
RNA type mRNA
GC content 0.46
exon number 18
gene id unm_hu7910
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 18325310 ~ 18369234 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGAGGCAACTCTCACGTTTTCTGTGTTTGGACAATTGGCAATTCTGCTCCACTGTCTTTGTGCGCACTTCGTTCTGCACAGTCCCCCCTCCGTCCTATTTGGCTATGGCAGagtagtgacacacacacacacacactcggcatGCCCTCCCCATATTTGTTTGACAGCTCTAAAAATAGTTCCCCGGACCAGTTTGGCCTTATCAAGTTCCAGCTGACTTCTACAACTGATACAGGCAGGGGGGATTTGTCAGAAACTAGGAAAAATCGAGGAGTTCTCTCATCGTGGATcccacttcatctgacctgatgGAGGAAACTGTGTTGGAGGAACCTATCTGTGAAGAAGCCGTATTGGCTGAAGAAATCCCAGAGGTGAAGCCCGCAGCAATGGTGAATAAGAATGGTGTGAAAGCGGAGGCTGCTACTGCTAGTGGGGGTGGGGATGTTGCTAGTGGGGGTGTTGCTAGTGGGGGTGGAGGTGCTGCTAGTGGTTTTAGCGGCACTAAGATCTTCACCTGGTTCATGGTTCTGGCTCTGTTGGGGGTGTGGAGCTCCGTGGCAGTGGTGTGGTTAGATCTGGTGGACTACGACAATGTCATTGGTAAACTTTCAGCGTATGACGCAGATGGCGACGGGGACTTTGATGTGGAGGACGCCAAAGTACTACTTGGAGTGAAAGAGAGGCCGGTTTCTCTGGTGCAGAAGGAAGCCAAGGAAGAATCTGCTGTGGAAGAACAAACCGAGCCCATTGTGGAGGAAGTCATCCAGACAACAGAGGGGACTGAGGAAGAAGGTCAGCTTCCACCGAACCCATCACAGGAGCAGCAGGCCCCTGAAGGTGAGAGTCCGGACGCAGTGGGAACTACCGCCAAAGCAGAAGATGCAACTGAGGAATCTTTTGAGGGGAAACTGGCGGTTGAGGCAGGATCGTTTGAGGCTGAGGCTGCTGTCCAGGTAGAGGAAAAGGAGCCAGTGGCAGTAGAGGAGAAAACAACACAGGAAGATTCAGAAGGAAATGCAGAGGACCAACCAGAGGATATGCTCCAATACAAAGCCAAGAAGAAGAAGCCTAAACTCCTGAATGCATTTGAGAAAACGATCAAGGCGGAAATTGACGCGGCTGAGAAGTTACGTAAAAAGGGGAAAGTGGAGGAGGCTGTCCGGGCTTTTGACACTCTAGTTCAGCAGTACCCCCAGAGTCCAAGGTGTCGCTATGGGAAAGCCCTGGCCGAAGATGACCTGGCAGAGAAGATGCGCAGCAACGACATGCTGCAGAAGGCCCTCAGCACGTACAAGGAGGCGTCAGAGCTGCCCAACGCCATGCCTGACCTCATCAAGGCCACACTGAAGAAACGGGCCGAGCGTCAGCAGTTCTTAGgTCGTATGAGGGGTGCCTTAGCCACGTTGGAGAAGTTGGTACAGATCTTCTCTGAGGACGTGGCCCTGAAGAACGATCTGGGTGTGGCTCACCTGCTCATCGGAGACAACAAGAGCGCCAAGAGGGTCTACGAGGAGGTGTTGGCCATTGCACCAAGTAACGGCTTTGCTAAAGTCCATTACGGCTTCATCCTCAAATCAGAAAATAAGATAGCAGAGAGCATCCCATTCCTCAGGGATGGTTTGGAATCAGGGGACCCTGGCACAGACGACGGCAGATTTTACTTCCACCTCGGAGACGCTTTGCAAAGAATGGGAGACGACAGTGCCTACAAGTGGTATGAGAGAGGGCACCAGAGAGGTCACTTTGCCTCCGTATGGCAGCGATCTCTCTACAATGTGGACGGTCTCAAAGCCCAGCCATGGTGGACGCCCAAGGACACTGGCTATATGGATCTAATCAAGACCCTGGAGAGGAACTGGAGGACCATTAGGGACGAGGCCCTGTCAGTGATGGATAAAACCACCGGCCTCTTTGTTCCAGAAGAGGAGAACCTCAGAGAAAAAGGGGAGTGGGGCCAGTTCACACTCTGGCAACAAGGCAAGAAGGCAGGGGAGTCCTGCCACAGTGTTCCAAAGACCTGTGGCCTGTTGGAGCGCTACACAGAGGCAACAGGCTGCAAGAGAGGACAGATCAAGTTCTCGGTGATGCAGCCTGGTACTCACGTCTGGCCCCACACGGGGCCCACAAATTGTCGCCTGCGCATGCACCTGGGCCTGGTCATCCCCAAGACAGGCTGTAAGATCAGGTGCACCAACGACACCAGGGCTTGGGAGGAGGGGAAAGTGCTCATCTTTGATGACTCCTTTGAGCACGAGGTGTGGCAGGACGCCGACAGCTACCGGCTCATCTTCATCGTGGATGTGTGGCACCCCGAGCTCACCCAGTACCAACGGCAGACTCTCTCCCCCATTTAAAGAATGTATGGTAAAATGACCCCAGCACTCACCTACTGGAGTGCTGGGGTTAACACTCATAAGAACGGAAGGGTCCATAGTatctggtctctgtctgtccacACATTCCTTCACATTCGGCCATTTTAGGTCAAAGGTGACAAATGTGACTTCATTTTGGAACCGTCTAGAAGAGTTACTGAAGGCCCTGTCAAATTGGAAAAAGCCTTAGTGACACTTTGGAACATTGACTGCTAACTGTGGTACTCACCAACTTGGTTTTTAGGCCAAAATGTGGACTTACGGTAAGGTGTGGGTTTAATATCACATAGGCTGTGTTGTAAATGTATCACAAGTGCATTCTTGTTTTTCATTAGTCAACCAAAGTGCCATGTGTCTGAAACATACCTAACATACAAACGGTAACTGAACAAAACGTTAGTATTGCAGCTAGTGAGTTTACTGTTGTATAGTTACTGATATAATTTCTTAAAGAGATCGTTTTCCTGGTTTTTATCCCAATCTTAATCGTTTTCTTTCCTCAAGAAAAGTTATTTGATGATTTTCATGTTCAAGTCTTCCAAAACGTGAGGTAAGAACTCAAATAAGATTAGAGTAACACGGAAAACTATCCCGTTAAGATGTTGCTAAGCTAGCTAAACCTCTGCTAGCTGTTGTTTCTCGAACACTTGATTTGGTTATTACACAGCTCTTATTGCATGTAATGGTCATGCATTAACTTCATGTTACTTCCATAGCTTTATACAGTAATCTGCATCTTACTTTATTTTGGGGTTCTATTTTTAGTAATACAGAAACACTGCTTATTAGGTCATTCCATTTCACTCGTATGATTTTCGCATGTCACTTTAGATTAATGGATGGGACATCACAATGCCAAGAATGTTTTTATTGCAGAATTAATAttgtaaaaaaacatatttttgtacGCTGACATATTTTCAACTGTGCCTTGACCTGGGAGCACACACAGCCCATTATACTCAACAGGCTTGTCTTTGTAATTTAAAGTCCTGCCAAACTTGTGTATTTACATTCTTAAATGTATCAAATATGAACATTTTGACTGAAGGCATATATTTTGTACATGCATAACATTTGAATGTTTTATAAGATGCTAATTTACCTGTGTAAAAGTTAGGCAGGAGCATGTTGAATGTACACCAGTCTTGTCACACTGCATTCCAAACCTGGGTCAAAATATGTCAAATACTTCCCAATACTTCAAATGCGCTTAATTTAGTTTGCCTTGTACAATGGAATAGTCCCTAAGAGGAGAAGTCCGAGCTAAAtaaagtgcactacataggcTATACTTGAGTATTAGAAAGCATTTCACCCAGGTCTGCTGCATTCCAGGTATAGCAAAGCTGACTAGAAGGGGTCTTTGCTTGACCAATGTTGATTTTCTAATGGAAAAAGAAATGCCGAAGCATATTCTTCTAGatgttgttatttaattactCTCTATGTGCGTTGGTAATCCGCTTCATCGCAGCAATGAAATCATGTCCAAATCAGTCCAGTGGGATTCTGCTGAGTTCATGTGCTATCAGAATAATCAGAAACTCAGGACTAAGAAATTCCTGGCAAGCCCGCGGACTCATCATAGCTACCTGTTTCAGATGTCCAAAACCGCTCATACTGATCTTACGGGTAGGAAATACGAGTGGGAAACTGGGGTAACATCAATGTACCCCACGTTTCCTACTTCAGAGGAGTATGTAAACATATCATAATGCCATGGGTCGGAGTCATTCGTTAGGACGATTGGATGTCATCCTGTCTGCCCAAAAAAGGATGAACTTTTCACCCAAGTGTGGCTGTCTGTCATGGACACGGGTGTCTTGGGGGTCTGTTTGGGCTGTGATAACACATTCAAGTTATCCTCCTGGCTTCAAAATAGTTTCTTAGTTACAATGGGGTAGTAAATCAAGCACGTTCACAAAAGCCACATCGTTTTGAGAATTATTTCACCTTTTGTGGTACTCTGTTATGAATCTATCACTTTTTGTAGTGTTGAAATCACTGAACTGTTCCATCTGTTGTAACTTGGCCTGCCAAGTAAGTAATGCATCTTTCAATTCTGTTTTGTATGTTGCACTGAATAATTGTAAACTAAATAGCTTCTTTTCAGTAAATGAAAAATGAGGTCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1445643 lncRNA downstream 44059 18280730 ~ 18281251 (-) True G1265310
TU1445600 lncRNA downstream 112469 18212520 ~ 18212841 (-) True G1265271
TU1445599 lncRNA downstream 113569 18211509 ~ 18211741 (-) True G1265270
TU1445588 lncRNA downstream 129580 18195501 ~ 18195730 (-) True G1265260
TU1445233 lncRNA downstream 157794 18167310 ~ 18167516 (-) True G1264941
TU1445708 lncRNA upstream 69641 18434983 ~ 18436635 (-) True G1265371
TU1445792 lncRNA upstream 206603 18571945 ~ 18572166 (-) True G1265452
TU1445793 lncRNA upstream 208208 18573550 ~ 18574311 (-) True G1265453
TU1445794 lncRNA upstream 209325 18574667 ~ 18574949 (-) True G1265454
TU1445808 lncRNA upstream 301724 18667066 ~ 18683212 (-) True G1265464
XM_036943923.1 mRNA downstream 24023 18292027 ~ 18301287 (-) False LOC110489729
XM_021562525.2 mRNA downstream 24023 18292256 ~ 18301287 (-) True LOC110489729
XM_036943922.1 mRNA downstream 24027 18292256 ~ 18301283 (-) False LOC110489729
XM_036943919.1 mRNA downstream 33391 18275476 ~ 18291919 (-) False LOC110489728
XR_005036056.1 mRNA downstream 33596 18275866 ~ 18291714 (-) True LOC110489728
XM_021562565.2 mRNA upstream 8089 18373431 ~ 18384106 (-) False LOC110489732
XM_021562566.2 mRNA upstream 8089 18373431 ~ 18384106 (-) False LOC110489732
XM_021562567.2 mRNA upstream 8089 18373431 ~ 18384106 (-) False LOC110489732
XM_021562568.2 mRNA upstream 8089 18373431 ~ 18384106 (-) True LOC110489732
XM_021562575.2 mRNA upstream 227654 18592996 ~ 18607504 (-) True LOC110489734
TU1445577 other downstream 141187 18183791 ~ 18184123 (-) True G1265249
TU1444458 other downstream 862333 17461828 ~ 17462977 (-) True G1264199
TU1443617 other downstream 1678893 16645644 ~ 16646417 (-) True G1263444
TU1442865 other downstream 2048758 16276009 ~ 16276552 (-) True G1262745
TU1442665 other downstream 2290188 15989286 ~ 16035122 (-) True LOC110490929
TU1445798 other upstream 211197 18576539 ~ 18580163 (-) False G1265456
TU1445796 other upstream 211376 18576718 ~ 18579791 (-) False G1265456
TU1445799 other upstream 211376 18576718 ~ 18580163 (-) True G1265456
TU1446969 other upstream 743217 19108559 ~ 19109357 (-) True G1266471
TU1447224 other upstream 1069676 19435018 ~ 19453770 (-) True G1266708

Expression Profile